Oryzias melastigma (Indian medaka): 112153358
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Entry
112153358 CDS
T07439
Name
(RefSeq) clathrin heavy chain 1 isoform X1
KO
K04646
clathrin heavy chain
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml04142
Lysosome
oml04144
Endocytosis
oml05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
112153358
04142 Lysosome
112153358
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
112153358
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oml04131
]
112153358
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
oml04147
]
112153358
Membrane trafficking [BR:
oml04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
112153358
Exosome [BR:
oml04147
]
Exosomal proteins
Proteins found in most exosomes
112153358
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_PEP5_VPS11
TPR_COPA_B
TPR_Vps41
Motif
Other DBs
NCBI-GeneID:
112153358
NCBI-ProteinID:
XP_024139298
Ensembl:
ENSOMEG00000017800
LinkDB
All DBs
Position
LG10:23422118..23450089
Genome browser
AA seq
1678 aa
AA seq
DB search
MAQILPIRFQEHLQLQNLGINPANIGFSTLTMESDKFICVREKVGEQAQVVIIDMADPNN
PIRRPISADSAIMNPASKVIALKDAAKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTV
ALVTDNAVYHWSMEGDSQPIKVFDRHSSLAGCQIINYRTDAKQKWLLLIGISAQQNRVVG
AMQLYSVDRKVSQPIEGHAAGFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTG
NQPFPKKAVDVFFPPEAQNDFPVAMQISSKQDVVFLITKYGYIHLYDLETGTCIYMNRIS
GETIFVTAPHEPTAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAG
AEELFARKFNTLFAAGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFG
ILLDQGQLNKFESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVY
LRANVPNKVIQCFAETGQFQKIVLYAKKVGYTPDWIFLLRNVMRISPEQGLQFSQMLVQD
EEPLADITQIVDVFMEYNLIQQCTSFLLDALKNNRPMEGPLQTRLLEMNLVHAPQVADAI
LGNQMFTHYDRAHVAQLCEKAGLLQRALEHYTDLYDIKRAVVHTHLLNPEWLVNFFGSLS
VEDSLECLRAMLSANIRQNLQICVQVASKYHEQLTTQSLTELFESFKSFEGLFYFLGSIV
NFSQDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCD
RFDFVHDLVLYLYRNSLQKYIEIYVQKVNPSRLPVVIGGLLDVDCAEDVIKNLIMVVRGQ
FSTDELVAEVEKRNRLKLLLPWLEARIHEGCEEPATHNALAKIYIDSNNNPERFLRENPY
YDSRVVGKYCEKRDPHLACVAYERGQCDQELIHVCNENSLFKSLSRYLVRRKNPELWASV
LLETNNYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFS
EHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFDVNT
SAVQVLIEHIGNLDRAYEFAERCNEPPVWSQLAKAQLQKGLVKEAIDSYIKADDPSAYME
VGQAAAQSGNWEDLVKFLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQ
QVGDRCYDDKMYEAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFA
CVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTE
LAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM
NHPADAWKEGQFKDIVTKVANVELYYKAVQFYLEFKPLLLNDLLIVLSPRLDHTRAVNFF
SKVKQLPLVKPYLRSVQNHNNKAVNEALNNLFINEEDFAALRTSIDAYDNFDNISLAQSL
EKHELIEFRRIAAYLFKGNNRWKQSVELCKKDKLYKDAMQYASESKDIELAEELLAWFLL
EDKKECFAACLFTCYDLLRPDVVLETAWRHNIMDFSMPYFIQVMREYLSKVDKLEASESL
RKQEEQATESQPIVYGTPQLMLTAGPNVAVPPQQAYGYGYPAAPGYGQPPQPSFGYGM
NT seq
5037 nt
NT seq
+upstream
nt +downstream
nt
atggctcagatcctgcctatccgcttccaggagcacctacagctccagaacctggggata
aacccagcgaacatcggcttcagcacgctcactatggagtcagacaagttcatatgcgtc
agggagaaagtgggcgagcaggcgcaggtcgtcatcattgacatggccgaccccaacaat
cccatccgccggcccatctccgctgacagtgccatcatgaaccccgccagcaaggtgatc
gcgctcaaagacgctgcaaagacgctgcagatctttaacattgagatgaagagcaagatg
aaggctcacacaatgacagacgatgtgaccttctggaagtggatctctctgaacaccgtg
gcgctggtcacagacaacgccgtgtaccactggagcatggagggcgactcccaaccaatc
aaagtctttgaccgccactccagcctggcgggctgtcagatcatcaactaccgcactgat
gccaaacagaaatggttgcttctaattggcatttcagcacagcaaaaccgtgttgttgga
gccatgcagttgtactctgtggacaggaaggtgtcccagcccattgaagggcacgctgca
ggcttcgctcagttcaagatggagggcaacgccgaagagtccactctgttctgtttcgcc
gttcggggacaggcgggaggaaaacttcacatcattgaagtgggaactcctccaaccggg
aaccagccatttccaaagaaagccgtcgacgttttctttcctccagaagcacaaaacgac
ttccctgttgccatgcagatcagctccaagcaggatgtggtctttctcatcaccaagtac
ggctacatccacctgtacgacctggagacgggaacgtgcatctatatgaacagaatcagc
ggggagactattttcgtcactgccccccatgaacccacagctggaatcattggagttaac
aggaaaggacaggttttgtctgtttgtgtggaggaggagaacatcattccctacatcacc
aacgtgctccagaatccagacctcgctctgcgcatggccgtccgcaacaacctcgctggc
gccgaggagctgttcgctcgcaagtttaacaccctctttgcagcagggaattactctgaa
gctgccaaggtggcagccaacgcgcctaagggcatcttaagaaccccagacaccataaga
aggttccaaagtgtcccggctcagcccgggcagacgtctccgttacttcagtactttggc
atccttctggatcaaggacagctgaacaagtttgagtctctggaactgtgcagacctgtc
cttcaacagggacgcaagcagctgctggaaaaatggctaaaagaagataagcttgagtgt
tctgaagaactcggagacctggtgaaatctgtcgatccgactctggccctcagcgtctac
ctcagagccaacgttcccaacaaagtcattcagtgctttgcagagacgggacagttccag
aagattgtcctttatgccaagaaggtgggctacactccagactggatttttctgttaagg
aatgtgatgcggatcagtccagagcagggcctccagttctcccaaatgctcgtccaggat
gaagaacctctggctgacatcactcagatcgttgatgttttcatggagtacaacctgatc
cagcagtgcacgtccttcctgctggatgctctgaagaacaacaggcccatggaaggacct
ctccagacacgcttgctggaaatgaatttggtccacgccccacaggttgcagacgccatc
ctgggaaatcagatgttcacccactacgatcgtgcccacgtggcgcagctctgtgagaag
gccggcctcctgcagagggcgctggagcactacaccgacttgtacgacattaagcgggcc
gtggtccacactcaccttcttaacccagagtggttggtgaacttcttcggctccctctcc
gtagaggactctctggagtgtctgagggccatgctgtctgctaacatccgtcagaacctc
cagatctgtgtgcaggtcgcctccaagtaccacgagcagctcacgacccagtcgctcacc
gaactgttcgagtccttcaagagctttgagggtttgttctacttcctgggctccatcgtc
aacttcagccaggatccagaggtccacttcaaatacatccaggccgcctgtaagacgggt
cagatcaaagaagtggagagaatctgcagagaaagcaattgctatgacccggaacgggtc
aagaacttcctcaaggaagccaagctaactgaccagctgcccttaatcatcgtctgtgac
cgctttgattttgttcacgatctggttctgtacctttatcgcaacagcctgcagaaatac
attgagatctacgtgcagaaggtgaacccaagccgtctgcctgtagtgatcggaggtctg
ctggatgtggactgcgctgaggacgtaattaagaatcttatcatggtggtgagaggtcag
ttctccactgatgaactagttgccgaggtggagaaaagaaaccgactgaagctgctgctg
ccctggctggaggctcgcatccacgagggatgtgaagaaccagcaacccacaacgctttg
gcaaagatctacatcgacagcaacaacaaccccgagcgcttcttaagggagaacccctac
tatgacagccgtgtggtgggcaagtactgcgagaagagagaccctcacctggcctgtgtg
gcttacgagcgagggcagtgcgaccaagaactcattcacgtttgtaatgagaattcactg
ttcaagagtctgtcccgttacctcgtacgccgcaagaaccccgagctgtgggccagcgtg
ctgctggagaccaacaactacaggaggccgctcattgatcaggttgtgcagaccgccctg
tcagagacgcaggatccagaggaagtgtccgtcaccgtcaaggccttcatgaccgcagac
cttcccaacgagctcatcgagcttctggagaagattgtgctggacaattcagtcttcagt
gagcacagaaacctacagaatctgctcatcctcacagccatcaaagcggatcgaacccgt
gtcatggagtacatcaaccgcctcgacaactacgacgccccggacatcgccaacattgcc
attagcaatgagctgttcgaggaggccttcgctattttccggaagtttgatgtcaacact
tctgctgtgcaggttctgattgaacacatcgggaacttggacagagcttacgagttcgca
gagcgctgcaatgagcctccagtgtggagtcagctggctaaggctcagctccagaagggc
ctggtaaaagaagccatcgactcctacatcaaggcggatgacccttctgcttacatggag
gtgggacaggcagcagcacagagtggaaactgggaggaccttgtgaagtttttgcagatg
gctcgcaagaaagcccgagagtcctacgtcgagacggagctgatctttgccctggccaag
actaaccggcttgctgagctggaggagttcatcaatggtccaaataatgcgcacattcag
caagtgggtgaccgttgctatgacgacaaaatgtacgaggctgccaaactgctatacaac
aacgtgtccaactttgggcgtctggcttccacgctggtgcacctaggagaataccaggca
gctgtggacggggcgcgcaaggccaacagcacccgcacctggaaggaggtgtgcttcgcc
tgtgtggatgggaaagagttccgccttgctcagatgtgcggcctgcatatcgttgtccat
gcggatgagctggaggagctaatcaactattaccaggaccgtggctactttgaggagttg
atcaccatgctggaggcggcgctggggctggagcgcgctcacatgggcatgttcactgaa
ctggccatcctctactccaaattcaaaccccagaagatgagggaacacctggagctcttc
tggtcccgtgttaacattccaaaggtactcagggcagctgagcaggcccacctgtgggcg
gagctcgtcttcctctatgacaagtatgaggagtatgacaacgccattatcaccatgatg
aaccatccagctgatgcttggaaggaaggccagttcaaagacatcgtcaccaaggtggca
aatgtggagctctactacaaggctgtccagttctacctggagttcaaaccgttgctgctg
aacgacctgctcatcgtcctctctcctcgactggaccacacgcgggcggttaacttcttc
agcaaggtgaaacagctgcctctggttaaaccataccttaggtctgtccagaatcacaac
aacaaggcggtgaacgaagcacttaacaacctcttcattaacgaggaagactttgcggct
ctgcgcacatccatcgacgcctatgacaactttgacaacatctccctggctcagagtctg
gagaagcacgagctgattgaattcaggaggatcgcagcttatctgttcaagggcaacaac
cgctggaagcagagtgtggagctctgcaagaaggacaagctctacaaggatgccatgcag
tacgcatccgagtccaaagacatcgagctggcggaggagctcctggcttggttcctgctg
gaagacaagaaggagtgcttcgccgcctgcctgttcacctgctacgacctgctgcggcca
gacgtggtgctggaaaccgcctggcgacacaacatcatggatttctccatgccatatttc
atccaggtcatgagggaatacctatcaaaggtggacaagcttgaagcctccgagtctctg
aggaaacaggaggagcaggccaccgagtcccaacccattgtttacggcacaccccagctc
atgctcacggcggggcctaacgtggccgtgccccctcagcaggcgtacggctacggctac
ccggccgccccgggctacggccagccgccacagcccagcttcggctacggcatgtga
DBGET
integrated database retrieval system
