Oryzias melastigma (Indian medaka): 112153503
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Entry
112153503 CDS
T07439
Symbol
ssrp1a
Name
(RefSeq) FACT complex subunit SSRP1a isoform X1
KO
K09272
FACT complex subunit SSRP1/POB3
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oml03000
]
112153503 (ssrp1a)
03036 Chromosome and associated proteins [BR:
oml03036
]
112153503 (ssrp1a)
Transcription factors [BR:
oml03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG2-related
112153503 (ssrp1a)
Chromosome and associated proteins [BR:
oml03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
FACT complex
112153503 (ssrp1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH1_SSRP1-like
Rttp106-like_middle
SSrecog
POB3_N
HMG_box
HMG_box_2
HMG_WDHD1
SSRP1_C
DUF4543
FERM_C1_MyoVII
DUF7493
Motif
Other DBs
NCBI-GeneID:
112153503
NCBI-ProteinID:
XP_024139537
Ensembl:
ENSOMEG00000021085
LinkDB
All DBs
Position
LG10:complement(13186053..13196965)
Genome browser
AA seq
706 aa
AA seq
DB search
MGDTLEFNEIYQEVKGSWNDGRLRFSKQNVVYKSNKTGKVDSIPAGELNLAQWRRVCLGH
GIKLGTSTGHVYKYDGFRDTDFEKISEFFKANYKMELTEKDMCVKGWNWGTAKFSGPLLS
FDVNDNTAFEIPLSNVSQCATGKNEVTLEFHQNDDTEVSLMEVRFYVPPSQADERQESVE
AFAQNVLSKADVIQATGDAVCIFKELQCLTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTV
LRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKEEDINLTLNMNEDDVERRFE
GKLNKNMSGSLYEVVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSGLLYPLERGF
IYVHKPPVHLRFEEISCVNFARGTTTTRSFDFEIETKQGNQYTFSSIEREEYGKLFDFVN
AKKLNIKNRGFKEKKGMKGKNDEYSDSDEDQHDAYLERMKAEGKIREEGNDSDESDAESD
ESFNPGEEDDDIAEEYDSNASASDSSDEGDDSEDESSKKKKPKKVVKEKKERKERKPRKE
KKQKDAGGPKRPMSAYMLWLNSSRERIKSENPGISITEISKKAGEMWRQLGKDEKEEWET
KAGEAKRLYDKAKKEYKESGGGSTTSTKKESKKSTSKKEEKKRKSAGGDKDKERGGNDSF
KSKEFIETSESSSDSDHKSKSKRKKESDEEEEEAESTPANSEEDSD
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atgggtgatacgctggagttcaacgagatctatcaggaagtgaaaggctcttggaatgat
gggcgactgcggtttagcaagcaaaatgtggtttataagagcaacaagacagggaaggtg
gacagcatcccggctggtgagctgaacctggctcagtggaggcgagtgtgtttaggtcac
ggcatcaaacttggcaccagtacaggacatgtgtacaagtatgacggcttcagggacaca
gatttcgagaagatctccgagttttttaaggccaactacaagatggagctgacagagaaa
gacatgtgtgtgaagggctggaactgggggacagcaaagttctcaggtccgctgctgtca
ttcgacgttaatgacaacacagcgttcgaaatcccgctctccaacgtttcccagtgtgca
acgggaaaaaatgaagtcactctggagtttcaccagaacgacgacacagaggtctccctg
atggaagtccgattctacgtcccccccagccaggccgatgagcgacaagagtctgtggag
gcatttgctcagaatgttctgtctaaggccgatgtgatccaagccacaggagatgctgtt
tgcatcttcaaggagttgcagtgtctgactcccagaggaagatatgacatccgtatctat
ccgacgttccttcacctgcatggtaagactttcgactacaagattccctacaccactgtc
ctccgtctcttcctgctgccacacaaggatcagaggcagatgttctttgtgattagcctc
gatcctcccatcaagcagggtcagactcgctatcacttcctcattctgctcttctccaaa
gaagaggacataaatctcacccttaatatgaacgaggacgacgtagaacgtcgttttgag
ggaaaactcaacaagaacatgtcggggtctctctatgaggtggtcagccgggtgatgaag
gctctggtcaaccgcaagattactgttccagggaacttccagggccactctggggctcag
tgcatcacctgttcatacaaggcttcttctggcctcctctatcccctggagagaggcttc
atttacgtccacaaacctcctgtccacctccgttttgaagagatctcctgcgtgaatttt
gccagagggaccaccaccacacgttcctttgactttgagattgagaccaaacaagggaac
cagtacactttcagcagcattgagagagaggagtatggcaaactatttgactttgtcaac
gccaagaaacttaacatcaagaacagagggttcaaagagaagaagggcatgaagggtaag
aatgacgagtacagtgactcggacgaagaccaacatgatgcctacctggagagaatgaag
gctgaaggcaagatcagggaggagggcaacgacagtgacgagtcagacgctgaaagtgat
gagtctttcaacccaggagaggaagatgatgacatagcagaagagtacgacagcaatgcc
agtgcaagcgacagcagcgacgaaggggatgacagtgaagatgaaagctcaaagaagaag
aagcccaagaaagtggtcaaggagaaaaaagaaaggaaagaaaggaagccacgcaaagag
aagaagcagaaggatgctggcggccctaagaggcccatgagcgcctacatgctgtggctg
aactccagccgagaaagaatcaagtcggagaaccccgggatctccatcaccgaaatctct
aagaaggcaggagaaatgtggaggcagctgggcaaggatgagaaggaggagtgggaaacg
aaggcaggggaggcgaaacgactgtatgacaaagcaaagaaggagtacaaagagagtggt
ggaggatcaactacaagtaccaaaaaagagagtaaaaaatctacaagcaaaaaggaggag
aagaagaggaagtctgctggaggagacaaggacaaggagcgaggaggcaacgacagcttc
aagagcaaagagttcattgagaccagcgagagttcttcagactccgaccacaagagcaag
tccaagaggaagaaggagtcggatgaagaggaagaagaggccgagtcaacacctgcaaac
tcagaggaagattctgattaa
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