KEGG   Oryzias melastigma (Indian medaka): 112153516
Entry
112153516         CDS       T07439                                 
Symbol
cul4b
Name
(RefSeq) cullin-4B
  KO
K10609  cullin 4
Organism
oml  Oryzias melastigma (Indian medaka)
Pathway
oml03420  Nucleotide excision repair
oml04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:oml00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    112153516 (cul4b)
  09124 Replication and repair
   03420 Nucleotide excision repair
    112153516 (cul4b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:oml04121]
    112153516 (cul4b)
   03400 DNA repair and recombination proteins [BR:oml03400]
    112153516 (cul4b)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:oml04147]
    112153516 (cul4b)
Ubiquitin system [BR:oml04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Cullin
     112153516 (cul4b)
DNA repair and recombination proteins [BR:oml03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      112153516 (cul4b)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      112153516 (cul4b)
Exosome [BR:oml04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   112153516 (cul4b)
SSDB
Motif
Pfam: Cullin Cullin_Nedd8 SecA_SW
Other DBs
NCBI-GeneID: 112153516
NCBI-ProteinID: XP_024139562
Ensembl: ENSOMEG00000014970
UniProt: A0A3B3DMJ1
LinkDB
Position
LG10:4997200..5008474
AA seq 864 aa
MFPTGLSSPNPPPQPTQEARPTATDVKSGSGNITSPKKRKINGSERGDTSDTISSSSPPK
ALNSSSGSPAALHIQKKLRFEDSVDFIGLDVKMAEEAAAAANAASSCSNNKSKAVFLAGG
VGHHANGLTKTAGSGTFSSSKPGAAKKLVIKNFREKPKLPENYTQETWQKLREAVEAIQN
STSIKYNLEELYQAVENLCSHKVSAKLYKQLRAACEDHIKAQIDQFREDALDSVLFLKKI
DKCWQDHCRQMIMIRSIFLFLDRTYVLQNSMLPSIWDMGLELFRFYIISDLKVQSKTING
ILLLIERERNGEAIDRSLLRSLLSMLSDLQIYQDSFEQRFLEETNRLYAAEGQRLMQERE
VPEYLHHVNKRLEEEADRVITYLDQSTQKPLIATVEKQLLGEHLTATLQKGLTQLLDENR
IQDLSLLYQLFSRVRGGVQVLLQHWIEYIKAFGSTIVINPEKDKTMVQELLDFKDKVDHI
IDVCFIRNEKFVNAMKEAFETFINKRPNKPAELIAKHVDSKLRAGNKEATDEELEKMLDK
IMIIFRFIYGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMF
KDMELSKDIMVQFKQYMQCQNIPGNIELTVNILTMGYWPTYVPMEVHLPPEMVRLQEIFK
TFYLGKHSGRKLQWQSTLGHCVLKAEFKEGKKELQVSLFQTLVLLMFNEGEEFSLEEIKL
ATGIEDGELRRTLQSLACGKARVLTKIPKSKDVEDGDKFSCNNDFKHKLFRIKINQIQMK
ETVEEQASTTERVFQDRQYQIDAAIVRIMKMRKTLSHNLLMSEVYNQLKFPVKPADLKKR
IESLIDRDYMERDKENSNQYNYVA
NT seq 2595 nt   +upstreamnt  +downstreamnt
atgtttccaacaggtttatcttcccctaatcccccaccacagccaacccaggaggctaga
ccgacggctactgatgtcaaaagcggtagtggaaacatcacatctccgaagaagaggaaa
ataaacggttcagaaaggggagacacaagtgacaccatctcgtcctcctcgcctcccaaa
gccctgaattcctcctccggctcccccgccgcgctgcacattcagaagaagttaaggttc
gaggactcggtggatttcattgggctggatgtgaaaatggctgaggaggctgccgccgcg
gccaacgccgcgtcttcgtgctccaacaacaaaagcaaagccgtgttcctggccggcggc
gtggggcaccacgcgaacggcttgacgaagaccgcagggtctggcaccttctccagcagc
aaacccggagctgccaagaaactagtcatcaagaacttccgagaaaaacccaagttaccg
gagaactacacacaggaaacctggcagaaattgagagaggcggtggaggccatccagaac
agcacttccatcaagtacaacctagaggagctttaccaggctgtggaaaacctctgctcc
cataaagtatctgccaagctttacaaacagctgagggctgcgtgtgaagatcacatcaag
gcccaaatcgatcaattcagagaggatgccctcgacagtgttcttttcctgaagaaaatc
gacaagtgctggcaagatcactgcagacaaatgatcatgattaggagtatatttttgttt
ttggatcgcacatatgttttacagaattcaatgttgccatcaatttgggacatgggtctg
gaactgtttcggttctacatcatcagcgatttgaaggtccagagtaaaaccatcaacggg
atcctgctgctcattgagagggaacgaaacggagaggccatagaccgcagtctgctgagg
agcctgctgagcatgctctctgacctgcagatttatcaagattcctttgagcagcgcttt
ttggaggaaacaaaccgattgtacgctgcagagggacagaggctgatgcaggagagagag
gttccagagtatctccaccatgttaacaaacgtctggaggaagaggctgacagagtaatc
acatatctagaccagagcacacaaaaacctctcatcgctacagtagagaagcagctgctt
ggcgaacatctcacagcgactcttcaaaaagggctaactcaacttctggacgagaacaga
atccaggatctgtctcttctctatcagcttttcagtcgagtacgaggtggtgttcaggtg
ctcctgcagcactggatagagtacataaaggcctttggcagcacaatcgttatcaaccca
gaaaaagacaaaacaatggtgcaagaactgcttgacttcaaagataaggtggatcacatc
attgacgtgtgcttcataaggaatgaaaagtttgttaacgctatgaaggaggcttttgag
acgttcatcaacaaacggccaaataaaccagcagagctcatagcaaaacatgtggattca
aagctgagagcaggaaacaaagaagcaacagatgaagaactggagaagatgctggataag
atcatgattatctttagattcatctatggaaaagatgtgtttgaggccttctacaaaaaa
gatctggcaaagaggttgctggtgggaaaaagtgcctcggtggacgccgaaaagtcgatg
ttatcaaagctaaagcacgaatgtggagccgcgttcaccagcaagttagagggaatgttc
aaggatatggagctctctaaagacatcatggtgcagttcaaacagtacatgcagtgccaa
aacattcctgggaacattgagctgacggtgaacatcctcaccatgggctactggccaacg
tatgtgccgatggaagtgcatctgcctccggagatggtgcgactgcaagagatctttaag
actttttacctgggcaaacacagcggccggaagctgcagtggcagtcaacgttaggccac
tgtgttttaaaagctgaattcaaagagggaaagaaggaactccaggtgtcactttttcaa
actctggtgctgctgatgtttaatgaaggggaagagttcagcctggaagagatcaaacta
gccacaggaatagaggatggtgaactgcgccggacgcttcagtcgctggcttgtgggaaa
gctcgagtcctcaccaaaatcccaaaaagcaaagacgtggaggacggggacaagttttcc
tgcaacaacgacttcaaacacaaactcttcaggatcaagataaaccagattcagatgaaa
gaaacggtggaggagcaagccagcaccacggaaagggtctttcaggatcgacagtatcag
attgatgccgccatcgtacggatcatgaagatgaggaagactctgagccataatctcttg
atgtcggaagtgtataaccagctcaagttccctgtcaagcctgctgacctgaagaagagg
atagagtctcttattgacagagactacatggagcgtgacaaggaaaactccaaccagtac
aactatgtggcctaa

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