Oryzias melastigma (Indian medaka): 112153563
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Entry
112153563 CDS
T07439
Symbol
syvn1
Name
(RefSeq) E3 ubiquitin-protein ligase synoviolin isoform X1
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml04120
Ubiquitin mediated proteolysis
oml04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
112153563 (syvn1)
04120 Ubiquitin mediated proteolysis
112153563 (syvn1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
oml04121
]
112153563 (syvn1)
Enzymes [BR:
oml01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
112153563 (syvn1)
Ubiquitin system [BR:
oml04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
112153563 (syvn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-C3HC4
zf-rbx1
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4_3
zf-RING_16
zf-RING_11
zf-RING_5
zf-ANAPC11
zf-RING-like
zf-Nse
FANCL_C
Endonuclease_7
Motif
Other DBs
NCBI-GeneID:
112153563
NCBI-ProteinID:
XP_024139646
Ensembl:
ENSOMEG00000016804
LinkDB
All DBs
Position
LG10:22951976..22962295
Genome browser
AA seq
626 aa
AA seq
DB search
MVRAVLVTATSLALTGAVVAHAYLLKHQFYPTVVYLTKSSPSMAVLYIQAFVLVFLLGKF
MRKVFFGQLRAAEMEHLIERSWYAVTETCLAFTVFRDDFSPRFVALFTLLLFLKCFHWLA
EDRVDFMERSPNISWLFHLRVLSLMGLLGVMDFLFVNHACHSIITRGASVQLVFGFEYAI
LLTMVLTTFIKYILHTVDLQSENPWDNKAVYMLYTELFTGFIKVLLYVAFMTIMIKVHTF
PLFAIRPMYLAMRQFKKAVTDAIMSRRAIRNMNTLYPDATPEDLQASDNVCIICREEMVT
GAKKLPCNHIFHSSCLRSWFQRQQTCPTCRMDVLRATNNNQTQAPAQAPPPAPAAPVNAP
AAPPPNVPPGMLPGFPPGVFPFWGPFPPVPPPAAAAAAPGGADAPPSSSEASQSAAGSSQ
PTSSSPADASPPAAAAAPGSAFPGFPFSFPPPPFPSAPWLPMPPPPPFVSSMPPPPPSLS
RLSEEELRELEAEGRRGLEARLQCLQNIHTLLDAAMLNIHHYLSTVTTLTPPRAESSSAD
ATNRPEAPAASSSSEKSSSTSDQASAATVSSLPADSTSSALDTERKENLDEGEVEDEDGE
PNAAELRRRRLRKLETAPSSSSPSDN
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atggtacgagccgtcttagtaactgccaccagtctggcgttgactggagctgtagtggct
cacgcttatttactcaaacaccagttttacccgactgtggtctacctcacgaagagcagc
cccagcatggcggtgttatacattcaggcgtttgttctggtgtttctgcttggaaaattc
atgaggaaagtcttttttggacagctgagagctgcagagatggagcatctcatcgagcgc
tcatggtatgcagtgacagagacgtgcctggctttcactgtattcagagatgacttctca
ccacgttttgttgccctcttcaccctcctgctcttcctgaagtgcttccactggctggct
gaggatcgagtggattttatggaacggagtccaaacatatcttggctttttcacctgaga
gtattatctctcatgggactgctgggtgtcatggacttcttgttcgtcaatcatgcctgc
cacagcatcatcactcgtggagcgtcagttcagctcgtctttggcttcgagtatgccatc
ctgctgaccatggtgctcacaaccttcatcaagtacattctgcacacggttgacctgcag
agcgagaacccatgggacaacaaggccgtctacatgctctacacggagctcttcacaggc
ttcatcaaagtgctgctctacgttgctttcatgaccatcatgataaaggtgcacaccttc
cccctgtttgccatccggcccatgtatttggccatgaggcagtttaagaaagctgtaact
gatgcaatcatgtccagaagagccatccggaacatgaacacactatatcctgatgcgacc
cctgaagatctgcaggcctccgacaacgtttgcatcatctgccgagaggagatggtcacc
ggcgccaagaaactaccgtgcaatcacattttccactccagttgcctgcgctcttggttc
cagagacagcagacctgtcctacgtgtcgcatggacgtcctcagagccaccaacaacaat
caaacgcaggccccagctcaggctccgccccctgcgccagcagccccggttaatgctcct
gcagctccgccccccaatgtccctccaggcatgctgccgggcttccctcctggtgtcttc
cctttctggggtcctttccctcctgtgcccccacctgctgctgcagctgcagctcctgga
ggcgccgatgccccaccgagcagctcggaagcatcacaaagtgcagcaggcagcagccag
cccacatcctcgtctcctgcagacgcctctcctcctgcagcagcagctgctccaggatca
gcgttcccaggcttccccttctccttccctcctcctccattccccagcgctccttggctg
cccatgcctcctccacctcctttcgtgtcatccatgcctcctccgcctccttctttgtcc
cgcctgtcggaggaagagctgagggagttggaggctgaggggcggcgaggtctggaggcc
aggctgcagtgtctccagaacatccacaccctgctggacgccgccatgctcaacatccac
cactacctcagcaccgtgaccacgctcactccgcctcgggctgagagcagctctgctgac
gccacgaaccgcccagaggctcctgccgcctccagcagctctgagaagagctcatccaca
tccgatcaagcgagcgccgccacagtttcctctctccccgccgactccacctcctctgct
ctggacactgaaagaaaagaaaacctggacgaaggagaggtggaggacgaggacggagaa
ccaaacgcagccgagctgaggaggcgccgcttacgcaagctggagacggccccctcctca
tcgtcgccctcagacaactga
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