Oryzias melastigma (Indian medaka): 112153854
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Entry
112153854 CDS
T07439
Symbol
usp42
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 42
KO
K11855
ubiquitin carboxyl-terminal hydrolase 36/42 [EC:
3.4.19.12
]
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
oml01002
]
112153854 (usp42)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
oml04121
]
112153854 (usp42)
Enzymes [BR:
oml01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
112153854 (usp42)
Peptidases and inhibitors [BR:
oml01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
112153854 (usp42)
Ubiquitin system [BR:
oml04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
112153854 (usp42)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
UCH_1
Motif
Other DBs
NCBI-GeneID:
112153854
NCBI-ProteinID:
XP_024140060
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All DBs
Position
LG19:2518824..2536148
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AA seq
1130 aa
AA seq
DB search
MTIVDRSSEKSDHESVGFNRSTFTSGDIGMEGSCSSSWAVGPTMPCDSPRLKSPGGCLGP
TPGAAVYNSTPSSVDRPKDQVVSSSDGIELPQKILFPPERLSLKWNQVHRIGAGLQNMGN
TCFLNSALQCLTYTPPLANHMLSREHSKSCQEPGFCMMCTMQNHIIQVFANSGNVIKPIG
VLNELKRIAKHFRYGSQEDAHEFLRYTVDAMQKSCLPGTKLDRQTQATTFIHQVFGGYLR
SRVKCLSCKAVSDTFDPFLDITLEIKMAPSVSKALEQFVKPEQLDGENAYKCTKCKKMVT
ASKRFTIHRSPNVLTLSLKRFANFTGGKITKDVKYPESLDLRPFMSQSQGEPQNYGLYAV
LVHSGFSCHAGHYFCYIKASSGQWYQMNDSSVSVSDIRSVLNQQAYVLFYIKTSDMKKVA
DYSGSSRSPSISGQSSPRPVVTPRSNAIHHNMGFIGPQLPPHAAKSAVHVNGNGAHKDFP
GSSKGTSSSVLGKPAHVLPSSSSSSSSSVSHSVSRPTMIPDQDKRQRLSFFIGQGKQNRP
SSSYSQSYPASSSGSLSSSHSTSDIRFVPRQLNHVNGAACSNGDQPGEGNGASLLVPYSQ
ESSEESDPENAASLDNGCLPRSKGSGATEGIGATSPNTTNGDAGARHSDGELNGPTCGTS
NQNGYGHHKVNGHKAPEKVSGSSSSVTAAVNGVDGGHAQPNKDAKVPSSQSGSFQNLQPA
ANESQRFQAADARAIPLPEPPPPHNAVSSPPSSTKPPSAADAEPASSSAQQVCSQSSSGL
SAAAQQHGNHEDGGERTNGPAAETEGETGTKDPKASSRGDDRQSTRDRDRVHSDYGRDRR
RHYRDRSPRRQTDGDHYRYRRDYRDYHHSYRDRFPPHERSYKDWDPERHWDRKFFHPREY
DRSSRRSYHHGHYYHRSDTDYDRRGYHYPHRDEAPGPWKWQQYGREPRAMKDKRSTWERD
HCRSRDRSSSPDALREPDRSKGSPSQEPPPKRDDHSHKREDCSEVHRYRKHKKSKKKKSK
DKDRHHRSGSSDVDSESRRKKRKRRRHRDSDPERRSSDAARSRDDRSSDERESRKRHLDG
SPLSEKRRRTDPSRDHPPPPCHSPPSNAPSYRHLNGHSENGFGRDDFYSH
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgaccatagttgacagatcttctgagaagtctgaccacgagtcagtcggatttaaccgg
tccaccttcaccagtggagacatcgggatggagggcagttgctccagcagctgggcggtg
gggcccaccatgccctgcgactccccgagactcaagtctcccggaggctgtctgggtcca
actcctggtgccgctgtctacaacagcacgccgtcctcggtggatcgacccaaggaccaa
gttgttagcagcagtgatggaatcgagctcccccaaaagatcctgttccctccagagcgg
ctcagcctgaagtggaaccaggttcaccgcatcggcgccggtctccagaacatggggaac
acctgcttcctcaactcggccctgcagtgtctcacatacacgcctccattagccaaccac
atgctgtcgcgggagcactccaagtcatgtcaagagccgggcttctgtatgatgtgcacc
atgcagaaccacatcattcaggtttttgccaactcaggcaacgtcatcaaacccatcggt
gtcctcaacgagctcaaacgaattgcaaagcacttccgctacggaagccaggaggatgca
cacgagttcctgcggtacacggtggacgctatgcaaaagtcctgcttacctggaaccaaa
ttggacaggcagacgcaggcaaccaccttcatccatcaagtatttggcggctaccttcga
tctcgagtcaaatgtttaagctgcaaagccgtctcggacacattcgacccttttctggac
atcactttagaaatcaagatggcgcccagcgtgtccaaagctctggagcagttcgtcaag
ccggagcagctggacggcgaaaacgcctacaaatgtacaaagtgcaagaaaatggtcact
gcctcaaagagattcacgatccaccgcagcccgaacgtgctgaccctctcgctcaaacgc
ttcgccaacttcaccggaggaaaaatcacaaaggacgtgaagtatccagagagtctggac
ctgcggcctttcatgtcccagtctcaaggagagccgcagaactacggattatacgccgtt
ctggttcactctgggttcagctgtcacgctggacactacttctgctatattaaggccagc
agcggtcagtggtatcagatgaacgactcctccgtgtccgtgagcgacatccgctctgtc
ctcaaccagcaggcttatgttctcttctacatcaaaacctcagacatgaaaaaagttgct
gactacagcggctcgagccgcagcccgagcatctccggtcagtcgtctccgcgtccagtc
gtgacgccgcgcagcaacgccatccaccacaacatgggcttcatcggtccccagctcccg
ccgcacgccgccaagagcgccgtccacgttaacgggaacggagctcataaggacttcccc
ggcagctccaaaggcaccagcagcagcgtgctaggaaagcccgcccacgtgttgccttcc
tcctcctcctcctcttcctcttctgtctcgcactcagtcagccgacccacgatgattcca
gaccaggacaaacgacagagactttcatttttcatcggacagggcaaacagaaccggccg
tcgtcgtcttacagtcagtcgtaccccgcaagctcctccggttctttatcttcctcacac
tctacctcagacattcgatttgtcccgcgtcaactcaaccacgtaaacggcgccgcgtgc
agtaacggagatcagcccggcgaagggaatggagcgtccctcttggtgccctacagccag
gagtcttcggaagaatccgacccggagaacgccgcgtctctggacaacggctgcttaccg
agaagcaaaggaagcggcgccacagaaggtatcggcgccacctctccgaacaccaccaac
ggggacgccggcgctcgccacagcgacggtgaactcaacggaccaacctgcggaacgtcc
aaccagaacggttacggacaccacaaagtgaacggacacaaggctccggagaaggtgtcg
ggaagttcatcctctgtgacggctgctgttaacggagtcgatggaggccacgctcaacca
aataaagacgcaaaagttccttcctcccagtccggttctttccagaacctccaacctgct
gctaacgaaagccagcgcttccaggccgctgatgcaagggctattccgctgcctgaaccc
ccgcccccccacaacgccgtcagctctccgccgtcgtccaccaagcccccctccgctgca
gacgcagagccggcttcgtcgtccgcccagcaggtctgctctcagagcagcagcgggttg
tctgcagccgcgcagcagcacggcaaccatgaggacggcggcgagagaacaaacggtccg
gcggcggagaccgaaggagaaacgggaactaaagatcccaaagcgagttccagaggcgac
gacaggcagtcgactcgcgacagagaccgagtgcactctgactacggcagagaccgcagg
agacactacagggacaggagtccacgccgccaaaccgacggggatcattaccggtaccgg
cgagactacagagactaccatcactcgtacagggaccgcttccctccccacgaacggagc
tacaaggactgggatcccgagcgccactgggaccggaagttctttcacccccgagagtac
gaccgctcctcgcggcgctcctaccaccacggccactactaccaccgatccgacacggac
tacgatcggaggggataccactacccccaccgcgacgaggccccgggcccctggaagtgg
cagcagtacggccgagaaccccgcgccatgaaggacaagaggagcacctgggagcgggat
cactgccgctctcgagacagaagctcttcgcccgacgcgctccgggaacccgacaggtcc
aagggctcccccagccaggaaccccccccaaagagggacgatcacagtcacaagagggaa
gactgctctgaggttcaccgctaccggaaacacaaaaaaagcaagaagaagaagtcgaaa
gataaagaccgacaccaccggagcggaagctcagacgtggactccgagagccgaaggaaa
aagcggaagaggcggcggcaccgtgacagcgaccccgagcggcggagttcggacgcggct
cggagccgcgacgacagaagcagcgacgaaagggaaagtcgaaaacggcacctcgacggc
agccccctgtcggagaaacggcgccgcacagaccccagcagggaccatccaccgccaccg
tgtcacagccccccctcaaacgctccatcctaccggcacctcaacggacactcggaaaac
ggattcggcagagacgacttctactcccactga
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