Oryzias melastigma (Indian medaka): 112153855
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Entry
112153855 CDS
T07439
Symbol
pms2
Name
(RefSeq) mismatch repair endonuclease PMS2
KO
K10858
DNA mismatch repair protein PMS2
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03430
Mismatch repair
oml03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
112153855 (pms2)
03460 Fanconi anemia pathway
112153855 (pms2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oml03400
]
112153855 (pms2)
DNA repair and recombination proteins [BR:
oml03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
112153855 (pms2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutL_C
DNA_mis_repair
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
112153855
NCBI-ProteinID:
XP_024140061
Ensembl:
ENSOMEG00000006353
LinkDB
All DBs
Position
LG19:complement(2494278..2504650)
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AA seq
826 aa
AA seq
DB search
MSDSGCSEPAGSIKAIDKHSVHQICSGQVVLSLATAVKELVENSIDAGATNIDIKLRDCG
VELIEVSDNGKGVKEANFEGLTLKHHTSKLRDFSDLIHVETFGFRGEALSSLCALSDLSV
ITCHESSQVGTKLVFDHKGHLVQKSPHPRQPGTTVTLQQLFYTLPVRHKEFQRNIKKEYA
KMIHVLQAYCIISAGVRLTCSNQSGRGKRSTVLGTSGSQSMRENIGAIFGPKQLQSLLPF
QQTSPSENVLEDYGLKEADLPEQLFTITGFISRCDHGVGRSATDRQFFFINSRPCDPLKV
TKVVNEVYHTYNRHQYPFVALNITVASECVDVNVTPDKRQIFLQEEKVLLATLKTSLISM
YEAGVNKISLNLPLTKSTSSASEQVIPSESSESVKPLSPFSSSSMNLAALKAAFSNSSSS
SGKSGKDPDSGPTQKTLRCFFKDAGKPASSRIQSPPSKPRMEKREAPSVGSSVLEDLKHG
RKSCSDADSDKDASCDFITIFQSSGSENSSAIEAEDSSSVFGSCPGEPDEQTGACSSNQD
APVSPEAKKARREERDFSVLSSSEETSATVDAPVCLPKTTAPLQFSFQELVGNLKLLQEQ
RRKSDGLQYRRFRAKINPGENQSAEEELRKEISKDMFREMKIIGQFNLGFIITKLNSDIF
IIDQHATDEKYNFEMLQQHTLLQGQKLIVPQKLHLTAISENVLMENIEVFRKNGFEFLID
EDAQVMERVKLVSLPTSKNWTFGPADIEELIFMLSDSPGVMCRPSRVRQMFASRACRKSV
MIGTALSVSEMRKLVVHMGEIEHPWNCPHGRPTMRHLANLDIISQD
NT seq
2481 nt
NT seq
+upstream
nt +downstream
nt
atgtccgactctggctgctctgaacctgctggatccatcaaagccatagacaagcactca
gtgcatcagatctgctcgggtcaggtggtcctcagtttagccacagctgtcaaggagctg
gtagagaacagcattgatgcaggagccacaaatattgacatcaagctacgggattgtgga
gtcgaactgattgaagtgtccgacaatggcaaaggcgtgaaggaagctaactttgaaggc
ctgacgttgaagcatcacacatcaaagttgagggatttctccgacctgatccatgtggaa
acgtttggcttcagaggtgaagccctcagctctctgtgcgctctgagtgacctcagcgta
atcacctgccatgagtccagccaggtcggcaccaagctggtgttcgaccacaagggccac
ctcgtgcagaagtctcctcacccccggcagccgggcaccacggtcaccctgcagcagctc
ttctacacgctgccggttcgacacaaggagttccagcggaacatcaagaaagagtatgct
aagatgatccacgtcctgcaggcgtactgcatcatctccgccggcgtgcgcctcacctgc
tccaaccaaagtgggcggggaaaacgcagcacggtgctcggcaccagcgggagccaaagc
atgcgggaaaacattggagccatatttggaccaaagcagcttcagagtcttcttcctttt
caacaaacgtctccctcagaaaacgtccttgaggattatgggttgaaggaggcggatctc
cccgagcagctcttcaccatcacggggttcatctctcgctgtgaccacggcgttggacgg
agcgccacagacaggcagttctttttcatcaacagccgcccatgtgaccccttgaaagtc
actaaagttgtgaatgaagtttatcacacatataatcgacatcagtatccatttgttgct
ttgaacatcactgttgcttcagagtgcgtggatgtgaatgtaaccccagacaaacggcag
atctttcttcaggaggagaaagtcttgctggcgactcttaagacttctctgatcagcatg
tatgaagctggagtcaataagatcagcctgaatctgcctctaaccaagtccacgtcttct
gcatccgaacaagtcattccgtcagagagcagcgagtccgtgaagccattgagtcccttc
tcgagttcgtccatgaacctggcggcgctcaaagctgctttttcaaacagcagtagtagt
tctgggaaatccgggaaggatcccgacagcggtccgacccagaaaaccctgcggtgtttc
tttaaggacgctggaaaacctgcttccagccggattcagagtcctccttcgaagccccga
atggagaagcgagaagctccttcagtgggaagttcagtgttagaagatcttaaacatgga
aggaagtcctgcagtgatgcagattctgacaaggacgcttcttgtgactttataaccatt
tttcagagttctggttctgagaatagttctgctatagaagctgaagatagcagcagtgtg
tttggatcttgtcctggagaaccagatgaacagacgggagcatgttcatcaaatcaagac
gcaccagtgagtccagaggctaaaaaagccaggagggaggagcgggacttcagtgtcttg
agctcttcagaggaaacttctgccacggtggatgcaccggtgtgtctgccaaagaccacg
gcgcctctgcagttttctttccaggagcttgtaggaaatctgaagctgctgcaggagcag
cgaaggaaaagcgacgggctgcagtaccgacgtttccgagccaaaatcaaccctggagag
aaccaaagtgcagaggaggagctcagaaaggagatcagcaaagacatgttcagagaaatg
aagatcatcggccagttcaacctgggcttcatcatcaccaagctgaactctgacatcttc
attattgaccagcacgccaccgacgagaagtacaactttgagatgctgcagcagcacacc
ttgctgcaaggccagaagctgatagtcccacagaagcttcacctcaccgccatcagcgag
aacgtcctcatggagaacatcgaggttttccggaagaacggctttgagtttctcatcgac
gaggacgctcaggtcatggagagggtgaagctggtgtcgttgcccaccagtaaaaactgg
acgttcggtcctgccgacatcgaggagctgatcttcatgctcagcgacagcccgggtgtc
atgtgccgcccgtcacgagtcaggcagatgtttgcttccagagcctgccgaaagtctgta
atgattggcactgctctgagtgtgagcgagatgaggaagctggtggttcacatgggggag
atcgagcatccgtggaactgtccgcatggccggccaaccatgagacacctcgccaacctg
gacatcatctcacaggactga
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