KEGG   Oryzias melastigma (Indian medaka): 112154130
Entry
112154130         CDS       T07439                                 
Symbol
snf8
Name
(RefSeq) vacuolar-sorting protein SNF8
  KO
K12188  ESCRT-II complex subunit VPS22
Organism
oml  Oryzias melastigma (Indian medaka)
Pathway
oml04144  Endocytosis
Brite
KEGG Orthology (KO) [BR:oml00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    112154130 (snf8)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:oml04131]
    112154130 (snf8)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:oml04147]
    112154130 (snf8)
Membrane trafficking [BR:oml04131]
 Endosome - Lysosome transport
  Endosomal sorting complexes required for transport (ESCRT)
   ESCRT-II complex
    112154130 (snf8)
Exosome [BR:oml04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   112154130 (snf8)
SSDB
Motif
Pfam: EAP30 Sigma70_r1_1 CDK5RAP3 MarR_2 DotZ MarR DUF4896
Other DBs
NCBI-GeneID: 112154130
NCBI-ProteinID: XP_024140566
Ensembl: ENSOMEG00000003554
LinkDB
Position
LG19:complement(18915793..18918266)
AA seq 257 aa
MRRGVGAGAIAKKKLAEAKYKERGTVLAEDQIVQMSKQLETFKSNLEEFASKHKQEIRKN
SQFRVQFQEMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLITL
DELHQRVLKGRGKYAQDVSQDDLIRAIKKLKVMGSGFGMIPVGGSYLVQSVPAELNMDHT
VVLQQAEKKGYVTVSEIKDVLKWEKERACHVLDHLLKEGLAWLDSQAAGEPQYWLPALFS
ELSSRDVTPEEVNQMTP
NT seq 774 nt   +upstreamnt  +downstreamnt
atgcgaagaggtgttggtgcgggagccatcgccaaaaagaagctggcagaggctaagtat
aaagaaagaggtactgttctagcagaagaccagattgtccagatgtctaaacagttggag
accttcaagtccaacctggaggagtttgccagcaaacataaacaagagattcgcaagaac
tcccagttcagggtccagtttcaggaaatgtgtgccaccattggtgtcgacccacttgcc
tctggaaaaggattctggtcggagatgcttggtgttggggatttctattatgagctcggt
gtacaaatcattgaagtctgcctggctctgaagcacagaaatggaggactcataacttta
gatgagcttcatcagcgagttttgaagggacgcggtaaatatgctcaagatgtgagccag
gacgacttgataagagccataaaaaaactaaaagtcatggggagtggttttgggatgatt
cctgttggtggttcctaccttgttcagtcagttccagcagagctcaatatggaccacact
gtagttctacagcaggctgagaaaaaaggatatgttactgttagtgaaatcaaggatgtt
cttaaatgggagaaggaaagagcatgtcacgtcttggatcacttgctaaaggaaggcctg
gcttggctggactcacaggctgccggggagcctcaatactggctgccggcgctcttctcc
gagctgtcgtctcgtgacgtcacaccagaggaggtcaaccagatgacaccatga

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