Oryzias melastigma (Indian medaka): 112154143
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Entry
112154143 CDS
T07439
Symbol
dhx8
Name
(RefSeq) ATP-dependent RNA helicase DHX8
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112154143 (dhx8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oml03041
]
112154143 (dhx8)
Enzymes [BR:
oml01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112154143 (dhx8)
Spliceosome [BR:
oml03041
]
Complex C
Other components
Step II factors
112154143 (dhx8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
AAA_16
Flavi_DEAD
T2SSE
TsaE
PhoH
DUF2922
ABC_tran
Sigma54_activ_2
RSRP
Motif
Other DBs
NCBI-GeneID:
112154143
NCBI-ProteinID:
XP_024140625
Ensembl:
ENSOMEG00000004222
LinkDB
All DBs
Position
LG19:complement(18094413..18104275)
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AA seq
1210 aa
AA seq
DB search
MADVGLEELSQLEYLSLVSKVCTELDNHLGINDKDLAEFVISLAEKQPAFDGFKAVLLEN
GAEFTDSLISNLLRLIQTMRPPSKASLSKNSEVSVKPKSEKDKLKEMFPALCRPNEPLPK
RPLDEDDVKVAADAIKELEMFMPSVSGTESKEGKTKSDKSRHRSRSRSRDRHRDRDRARD
RDRDRRRRHRSRSRSRSRSRSRDRHRDRDRGKRREKSSRWGERSPSPRKDQDRDGDRWKD
KHVDRPPPEEPSVGDIYNGKITSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVAD
VVSKGQRVKVKVLSFTGSKTSLSMKDVDQDTGEDLNPNRRRNVGPEGGEEVTMRNPDRPS
NLNLVHAPELEPDDTLERKRLTKISDPEKWEIKQMIAANVLSKEEFPDFDDETGILPKVD
DEEDEDLEIELVEEEPPFLRGHTKQSMDMSPVKIVKNPDGSLSQAAMMQSALAKERRELK
QAAREAEMDSIPMGLNKHWVDPLPDVDGRQIAANMRGIGMMPNDIPEWKKHAFGGNKASY
GKKTQLSILEQRESLPIYKLKEQLVQAVHDNQILIVIGETGSGKTTQITQYLAEAGYTAR
GKIGCTQPRRVAAMSVAKRVSEEYGCCLGQEVGYTIRFEDCTSPETVIKYMTDGMLLREC
LIDSELGQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRTDMKLIVTSATLDAVKFSQYFY
EAPIFTIPGRTYPVEVLYTKEPETDYLDASLITVMQIHLTEPPGDILVFLTGQEEIDTAC
EILYERMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVVIATNIAETSLTIDG
IYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGPGKCYRLYTERAYRD
EMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLITAMEQLYTLGALDDE
GLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVFYRPKDKQALADQ
KKAKFHQPEGDHLTLLAVYNSWKNNKFSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHK
LDVVSCGKATVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFNRQPEWVV
YHELVLTTKEYMREVTTIDPRWLVEFAPAFFKVSDPTRLSKQKKQQRLEPLYNRYEEPNA
WRISRAFRRR
NT seq
3633 nt
NT seq
+upstream
nt +downstream
nt
atggcagacgtcgggctagaagagctgtcgcagctcgaatatttgtccttagtgtcaaag
gtctgtacggagctcgacaatcatttaggaataaacgacaaagatttagctgagtttgtc
atcagccttgctgagaaacaaccggcctttgatggattcaaagctgttttacttgaaaat
ggagctgaattcacagattctctcatcagcaacttgctcagactcattcagacgatgcga
cctccatccaaagcatcactgagtaaaaactcagaagtgtctgtcaaaccgaaatcggag
aaagacaaattaaaggagatgttccctgcactctgtagacccaatgagcctttaccaaag
cggccgctggatgaggacgacgtcaaagtagccgctgatgcaataaaagagcttgagatg
tttatgcccagcgttagtggaacagagtccaaagaaggcaaaacaaagtcggacaaaagc
agacatcgcagcagaagcagaagcagagacagacaccgggaccgagatcgagccagggat
cgagacagagacaggaggcgacgccatcgctctcgatcgcgctcgagatccaggtctcgc
tccagagaccgccacagagatagagaccgaggcaaaagaagggagaagtcctcccgctgg
ggggagcgctcgcccagcccccgaaaggatcaggacagggacggggaccgctggaaagac
aaacacgtggaccggcctcctccagaggagccttctgtgggggacatctacaacggcaag
atcaccagcatcatgcagttcggatgttttgtccagctggagggattaaggaagcggtgg
gagggtttggtccacatctctgagctgcgcagagaggggcgagtcgccaacgtggccgac
gttgtcagcaagggtcagagagtcaaagtgaaggttctgtcattcacgggctcaaagacc
agtctgagtatgaaggacgtggatcaagacacaggagaagatctgaacccgaacaggagg
aggaacgtgggtccagaaggaggagaggaggtcaccatgaggaaccctgaccggccctct
aacctgaacctcgtccacgcccccgaactggaaccggacgacactctggagcgcaagaga
ctcacaaagatctctgacccagagaagtgggagatcaaacagatgatcgccgccaacgtt
ttgtccaaagaagaattcccagactttgatgatgagacgggaatccttcctaaagttgac
gatgaagaagatgaagatctggagattgagctggtggaggaggagcccccatttctgagg
ggacacaccaaacagagcatggacatgagtcctgtcaagatcgtcaagaacccggacggg
tcgctgtctcaggccgccatgatgcagagcgccctggctaaagagcggcgggagctgaag
caggccgcccgagaggcggagatggactccatccccatggggctgaacaaacactgggtc
gacccgctcccggacgtggatggacggcagatcgctgctaacatgaggggcatcggcatg
atgcccaacgacatcccagagtggaagaagcacgcttttggaggaaacaaggcctcctat
ggaaagaagacccagctctccatcctggagcagagggagagcctccccatttacaagctg
aaggagcagctggttcaggccgttcacgacaaccaaatcctgatcgtcatcggagagacc
ggctctgggaaaaccactcagatcacccagtacctggcagaggcgggttacacggcccga
gggaagatcggctgcacgcagcctcgccgtgtggccgccatgtcggtggcgaagagagtc
tctgaggagtacggctgctgtctgggacaagaggtgggttacaccatccgttttgaggac
tgcaccagtcccgagacggtcatcaaatacatgacggacggtatgctgctgcgagagtgc
ctgatcgactcggagctgggtcagtacgccatcataatgctggacgaagcccacgagagg
accatccacaccgacgttctcttcggtctcctcaagaagacggtgcagaagcgcacagac
atgaagctgatcgtcacttcagccacgctggacgccgtcaagttctctcagtacttctac
gaagctcccatcttcaccattccgggcagaacctatccagtagaggttctttacaccaaa
gagccggagacggactacctggatgccagcctcatcaccgtcatgcagattcacctgact
gagcctccaggtgacatcctggtcttcttaactggacaggaggagatcgacaccgcctgt
gagatcctgtacgagaggatgaagtctctgggacccgacgttcctgaactcatcatcctg
ccggtttattccgctctgcccagcgagatgcagaccaggatctttgacccggctcctccc
ggcagcaggaaggttgtcatcgccacaaacatcgcagaaacctccctgaccatcgatggg
atttattacgtggtggatcccggcttcgtcaaacagaaggtctacaactccaagaccggc
atcgatcagctggtggtcactcccatctcccaggctcaggccaagcagagggcgggtcga
gctggcagaaccgggccggggaagtgttacaggctgtacacggagagggcttacagagac
gagatgctgaccaccaacgtccccgagatccagagaaccaacctggccagcaccgtgctg
tccctgaaggccatgggcatcaacgaccttctgtccttcgacttcatggacgcccccccc
atggagaccctgatcacagccatggagcagctgtacacgctgggggcgctggacgacgag
gggctgctgacacggctgggcagacggatggcggagtttcctctggagcccatgctctgc
aagatgctcatcatgtcggtccacctgggctgcagtgaagagatgctgaccatcgtgtcc
atgctctctgtgcagaacgtcttctacagacctaaagacaagcaggcgctcgctgaccag
aagaaggccaagttccaccagcctgaaggcgaccacctgaccctgctggcggtctacaac
tcctggaagaacaacaagttctccaacccgtggtgctacgagaacttcatccaggcccgc
tccttgcgccgggcccaggatattcgcaagcagatgctggggatcatggacaggcataag
ctggatgtggtgtcctgtgggaaagccacggtacgagtgcagaaagccatctgcagcggc
ttcttcaggaacgcagccaagaaggatcctcaggagggctacaggaccctcatcgaccag
caggtggtgtacatccacccctccagcgccctcttcaaccgccagcccgagtgggttgtg
taccacgagctggtgctgaccaccaaagagtacatgcgagaggtgaccaccatcgacccc
cgctggctggtggagtttgcgcccgccttcttcaaagtgtcggatcccacgcgcctcagc
aagcagaagaagcagcagcgcctggagccgctctacaaccgctacgaggagcccaacgcc
tggaggatctcccgcgccttcagacgccgctga
DBGET
integrated database retrieval system
