Oryzias melastigma (Indian medaka): 112154224
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Entry
112154224 CDS
T07439
Symbol
epas1a
Name
(RefSeq) endothelial PAS domain-containing protein 1 isoform X2
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml04137
Mitophagy - animal
oml04140
Autophagy - animal
oml04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
112154224 (epas1a)
04137 Mitophagy - animal
112154224 (epas1a)
04148 Efferocytosis
112154224 (epas1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oml03000
]
112154224 (epas1a)
Transcription factors [BR:
oml03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
112154224 (epas1a)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAS_3
PAS_11
bHLH_HIF1A
PAS
PAS_9
PAS_4
HLH
PAS_8
Motif
Other DBs
NCBI-GeneID:
112154224
NCBI-ProteinID:
XP_024140779
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Position
LG19:13368069..13373862
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AA seq
354 aa
AA seq
DB search
MMTADKEKKRAISREAARKRRRVETDVFEDLSRLLPLQPSVRSHLDKPSIIRLTLSYIRM
HTLLKENMKTDAGAGDATWVQHGLEVEEGFNGGQNVEQKECWAFMQSEEVNMYLRVMEGF
VMVLSTEGDMIFLSDNVSKYMGLTQTELMGHNIFEYTHPCDHEEIRHNLRLTAEDVWCSQ
KRDFVMRIKSTLTHRGRSANLKSATWKVLHCQGRAKVCMASSAASCFLLTCRPLPLSHTL
LSTHTFTSQHSMDMRFTYCDQRVASLLGYRPNELLGRSIYDLCHTLDTNCLNKNHLNLCL
KSQSVSGQYRMMVKGGGYVWVESHSAVIPSSRPSRSRPVTHQPLCILTVTYVLR
NT seq
1065 nt
NT seq
+upstream
nt +downstream
nt
atgatgacagctgacaaggagaaaaagagagcaatcagccgagaagcagccagaaagagg
aggcgagtggagacggacgttttcgaggatttgtctcgcctcttacccctgcagccttct
gtccgctctcacctggacaaaccctccatcatccggctgactctcagctacatccgcatg
cacactctgctcaaagaaaacatgaagacagatgctggagccggggatgcaacatgggtt
caacatggactggaagtggaggagggatttaatggaggacaaaacgtggagcagaaggag
tgctgggcgttcatgcaatcagaggaggtgaacatgtacctgagggtcatggagggattc
gtgatggtcttgtccaccgagggcgacatgatcttcctctctgacaacgtcagcaaatac
atgggtttgactcagacggagctgatggggcacaacatttttgagtacactcatccctgc
gatcatgaggaaatcagacataacctccgtctgacagcagaggatgtctggtgcagccag
aaaagagattttgtcatgaggataaaaagcactctgacgcacagagggagaagtgctaac
ctcaagtcggccacatggaaggtgctgcactgtcagggcagagccaaggtgtgcatggcc
tcgtctgcagcgtcctgcttcctcctcacctgccggcctctgcccctctcacacaccctt
ctcagcactcacaccttcaccagccagcacagcatggacatgaggttcacgtactgcgac
caaagagtggcttctcttttaggctacagacccaacgagctgctgggccgttccatctac
gatctctgtcacacactggacacaaactgcctgaacaaaaaccatctgaacttgtgctta
aagagccagtccgtcagcggtcagtacaggatgatggtgaagggtggaggttatgtctgg
gttgaaagccacagcgccgtcatccccagcagccgaccctccaggtccagacccgtgact
caccagcccctctgcatcctgactgtcacttatgtgctcaggtga
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