Oryzias melastigma (Indian medaka): 112154276
Help
Entry
112154276 CDS
T07439
Symbol
si:ch211-152f22.4
Name
(RefSeq) zinc finger BED domain-containing protein 1 isoform X1
KO
K24637
zinc finger BED domain-containing protein 1 (E3 SUMO-protein ligase ZBED1) [EC:2.3.2.-]
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oml03000
]
112154276 (si:ch211-152f22.4)
04121 Ubiquitin system [BR:
oml04121
]
112154276 (si:ch211-152f22.4)
Transcription factors [BR:
oml03000
]
Eukaryotic type
Zinc finger
Cys2His2 BED
112154276 (si:ch211-152f22.4)
Ubiquitin system [BR:
oml04121
]
Ubiquitin ligases (E3)
UBL E3 ligases
112154276 (si:ch211-152f22.4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dimer_Tnp_hAT
zf-BED
DUF659
zf-H2C2_5
Motif
Other DBs
NCBI-GeneID:
112154276
NCBI-ProteinID:
XP_024140865
Ensembl:
ENSOMEG00000006797
UniProt:
A0A3B3BJP2
LinkDB
All DBs
Position
LG19:14445972..14450508
Genome browser
AA seq
623 aa
AA seq
DB search
MSHRKRSSVWMYFSLETNSKSRCNICNKIISFKSGSTNNLHRHLKTQHINAKIKEVKIEP
NCENEVESVNTFASPLDTQYTSVTVTETTATPALSVATEPSSTPEQTSFFNYVPPPALTP
SRQGEIDEELAKMIATDFQPIKIVEDRGFESFCYALNPSYVLPCRGLLTQKLYDMYEREV
EPLKRRLSGVSAVCLTMDCWTSQATSFMSVTCHFIEDFHMSSCLLDCFEFNEWHTVDNLA
NNLLSVAAEWGVDNKVECCLTDNSPNIEKAIQATGWTHLPCLAHTINLVVRNSLNGPQPI
INKVKEAVEYFHRSPAGEQQLKEAQVQMQMDTPPLKRDCATRWNSTYYMLQSFLANKDPI
VSTLAVTNEPVHPLFPEEWIALQEICNILKPFEEVTAELSAESYMTASKVILLVRGLQRA
MADFHRRVTTQAALDVVSVLSSGMSARFHRIESNHILADAAALDPRFQRMAFVDGGTADE
AFQRVSTAAAGIAISSREPNQLDSGASESIVWNYFYEEVAETKPSRNLPADSVTEVRGYL
QEPLLPKNKDPLQWWKSRSSVYPRLSRLVAKKLCVVATSVPAERLFSKTGELFAERRSRL
KPATVKSLIFLNGNLPKDKKERP
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgagccacagaaagaggagcagcgtgtggatgtacttttcgcttgagactaacagtaag
tctaggtgcaatatttgcaataaaataatttcatttaagtctggctccacaaataatctg
cacaggcatttaaaaacccaacacatcaatgctaaaatcaaagaggtgaagatagagcct
aactgtgagaatgaagtggagagtgtcaatacctttgcctccccattagacacacagtat
actagtgtcacagtcactgaaaccacagctacaccggcactctctgttgcaactgagccc
tcatcaacacctgaacaaaccagtttttttaattatgtcccacctcctgcattaaccccg
tcgagacagggggagatagacgaagagctggccaagatgatagctaccgactttcaacca
attaaaatcgtggaagaccggggttttgaaagcttttgttacgctctcaatccctcttat
gttcttccatgtcgagggttactgactcagaaattgtacgatatgtacgagagagaagta
gaaccactgaagagaaggctgtccggagtgtcagccgtttgcctaacgatggactgttgg
acgtcacaggctacgtcattcatgtctgtaacttgtcacttcattgaagactttcatatg
tcctcctgcctcctggattgctttgaatttaacgagtggcacacagtggacaacttggcg
aataacctcctcagtgttgcagcagagtggggtgttgacaacaaagtggagtgctgctta
acagacaattctccaaacatagaaaaggccattcaagctacaggctggactcatctcccc
tgcctggcacacaccataaaccttgtggtaagaaattccctcaacggtccacaacccatc
attaacaaagttaaggaggcggtggaatactttcatagaagcccagcaggagaacaacaa
ctgaaggaagcacaagtccaaatgcagatggacacaccaccactcaaacgagactgtgcc
acaagatggaattcaacatattacatgttgcaaagtttcctcgccaacaaggaccccatt
gtctccaccttggctgttaccaatgaacctgtccaccctttatttccagaagaatggatt
gcattgcaggaaatatgcaacatcctgaagccatttgaagaggtcactgctgagctcagt
gcagaaagctacatgactgcctccaaagtaatactgctggtcaggggactgcagagagcc
atggctgatttccacaggagggtaacgacacaagcagctctagatgtggtcagtgtgctt
tcttctggcatgtcagcgagattccataggattgaatccaaccatatccttgctgacgct
gctgcgctggaccccagattccaaaggatggcatttgtggatggtggaactgcagacgag
gcttttcaaagagtatcaacagcagcagcaggcatcgcaattagctccagggaacccaac
cagttagacagtggtgcttcagaatcaattgtttggaactatttctatgaggaagtagct
gaaacgaagccatcccgtaacctcccagcagacagtgtcacagaggtgcgggggtaccta
caagagcctcttcttccaaaaaataaagatcctctccaatggtggaaaagtcggagttct
gtgtaccctaggcttagcagactcgtggccaagaagctttgcgttgtggccacatcagtt
ccagctgaaagacttttctcaaaaactggagaactattcgcagagaggagaagtcgcctg
aagcctgcgaccgtaaaatcactgatctttctcaatgggaatttgccaaaggacaagaaa
gagagaccataa
DBGET
integrated database retrieval system
