Oryzias melastigma (Indian medaka): 112154279
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Entry
112154279 CDS
T07439
Symbol
shank3b
Name
(RefSeq) SH3 and multiple ankyrin repeat domains protein 3 isoform X1
KO
K15009
SH3 and multiple ankyrin repeat domains protein
Organism
oml
Oryzias melastigma (Indian medaka)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
SAM_1
Ank_4
SH3_2
SAM_2
Ank_3
Ank_5
PDZ_6
PDZ
SH3_9
SH3_1
FERM_f0
Motif
Other DBs
NCBI-GeneID:
112154279
NCBI-ProteinID:
XP_024140873
Ensembl:
ENSOMEG00000022569
LinkDB
All DBs
Position
LG23:22220860..22260897
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AA seq
1728 aa
AA seq
DB search
MPLSPAADTKHDRPRQQAVTNGNPTGSAVARDDDGDDTPPGNSIVVRIGIPDLQQTKCLR
LDPELPVWTSKQKVLVTLTQSLSDVLNYGLFQPAFNGRAGKFLDEERLLKEYPLPPITPI
PYLEFRYKRRVYTQSYVDDKQLAKLHTKANLKRFMEHVHQKNVEKVSKWLEKGLDPNFHD
SDSGECPLTLAVQLEDSCELIKVLRSGGAHLDFRTRDGITALHRAVLCRNSTALMTLLDL
GASPDYKDSRGLTPLYHSAMVGGAPYCCELLLQDHASIGITDENGWQEIHQACRYGNVQH
LEHLLFYGADMSSQNASGNTALHLCALYNQDGCARVLLFRGANKDIKNYNNQTAFQVAII
AGNFDLAETIKIHKSSDVVVPFRETPSYTKRRRFGATKSPAGNGLSSPRSLIRSASDNAL
ESPASSPGPSLQSLETHHDSHTHSLRRHTRRLSPSGAGHVENSPPSSPPITPQMRKKRLY
SAVPGRTFIATRSHVPQGPGEIQLHRGERVKVLSIGEGGFWEGTVKGRTGWFPADCVEEV
QMRQFDPRLETREDRTKRLFRHYTVGSYDNYTSYSDYVIEEKIAVLQKRESEGFGFVLRG
AKAETPIEEFAPTPAFPALQYLESVDQGGVAWRAGLRTGDFLIEVNGTDVVKVGHRQVVS
LIRQGGSRLLMKVVSVSRKSESNLIRKKAPPPPKRAPSTSLTLRSKSMTADLEDIARRRR
FEKLDEMLAAGQQEVVLRGRPTDDFRAATVKQRPTSRRITQAEINSLFERQGLVPPSAPE
KSTMALPRGMSRTKSFGTPEDDRITALINESRFPRSSSLTDSFIPPPPQTAPPPPPSAAS
ISALYMFDSGPPPSFLPPPPPARGEGLTRSSFKPGAEPRLQELSDSPARSHAHAERQRKA
RSMIILQDTTAPPPAMQADGHVTPGAHALHTATHTATHTLHTATHTSTLSLHSTSPSLGH
SPLSRRRGRPIENPYANVGQQAPPTKPQRRKSPLLKQLPVEEQGLGIRDHDPSKPDGGGP
PSPSRAELYQQQVLSERARVQGRRSSLFLSVEGAGSDNQAPPLLTQSHSMDDLGELPPPA
PVLSPSPTPHTFLHPLTGKPLDPSSPLALALAARERALTARTPSPEPRTKHASASTTPIP
TPAASPEGRHKRTPLTTPQSSPEPRSKRSTPQMSPEQRAKRTTPQTSPELRHKRMTPPLF
PDGQVERPETEGGVTSPAAPSPERWRPCPLPALANESHSPLIDRRRSLTVGSSEEEGGAY
TVTLPPALLSSSDEETREELRRIGLVTPPPAFASPPAPPPPSSLALLPRRSGEGGGESGP
ESLGKRGDEEEAGDERLHEGSTSPSSLPPSITLASPSAQTTPSSPPATHPSPSSTATSPS
GLKPRLRSPIGRGRSALRDPLLKQSSDSELLPSVASASSPSSPLCSSPTSGSSRQPRYLF
QRRSKLWGGGDDERRGFYPEDGVGRPAALGGQGSGSAVDLTSRSASALELSGRAGSGLDL
ANRLQLLNKDSHSLGEEPSPLDPGRRSPVGGARLFSSLGELHTISQRGYGASYTVRPGSR
YPVTRRSPSPSPSPSDRSIGLASSPAPERPDLSSGRGLTILKSSSLSLPSEPKEVRFVMR
SASARTRSRSPSPSPHASPCPSPVLSGPLLALRPWRQRPLSLWNKYDVGDWLESMGLAEH
RQRFQEHEIEGSHLPALTKDDYIELGVTRLGHRINIERALRQLLEGST
NT seq
5187 nt
NT seq
+upstream
nt +downstream
nt
atgcctctgagtccggctgctgacaccaaacatgatcgcccacggcaacaggcggttact
aacggcaacccgacaggctctgctgtcgccagggacgacgacggggatgacacgccccct
ggaaacagcatcgtggtccgcatcggcatcccagacctacagcagacgaagtgtttgcgg
ttggacccagagttaccagtttggaccagtaagcagaaggttctggtgaccttgactcag
tctctgtcggatgttttgaactatggtctcttccagccggcgttcaacggccgagccgga
aagtttctggatgaggagcgcctgctgaaggagtatcctctcccccccatcactcccatc
ccttacctggagttccgctataagaggagggtttacacgcagagttacgtggacgataaa
cagctggccaagctgcacaccaaggccaacctgaagcgcttcatggaacatgttcaccag
aagaacgtggagaaggtctccaaatggctggaaaaaggtctggatccaaacttccacgac
tctgacagcggagagtgtcccctgactctggccgtgcagctggaggacagctgcgagctc
atcaaggttctgcgcagcggaggagcccacctggacttcagaaccagagacggcatcacg
gccttgcaccgggccgtcctctgccggaacagcaccgccctgatgactctgctggacctg
ggagcgtcgcccgactacaaggacagcaggggcctcactcctctctaccactccgccatg
gtgggcggcgccccctactgctgcgagctgctgctgcaggaccacgccagcatcgggatc
accgacgaaaacgggtggcaggaaatccaccaggcctgtcgctacggcaacgtgcagcac
ctggagcacctgctgttctacggcgccgacatgagctcccagaatgcctcaggaaacacg
gcgctgcacctctgtgctctgtacaaccaggacggctgcgcacgagtgctgctgttcaga
ggagccaacaaggacatcaagaactacaacaaccagaccgccttccaggtggcgatcatc
gctggaaactttgatttggccgagaccatcaagatccacaaatcgtctgacgttgtagtt
cccttcagagaaacgccctcctacaccaagcgccgccgatttggcgccaccaagtcgccg
gcgggaaacggcctgtcatctcctcgctctctgattcgctcggctagcgacaatgctctg
gaaagccccgcctcctcacctggcccctccctccagagcctggagactcatcacgactcg
cacacacactctctgcggcgccacacacgccgcctcagcccgagtggggcggggcatgtg
gagaacagcccgccctcctctcctccaatcaccccccagatgaggaagaagaggctgtac
agcgccgtgccggggcggaccttcatcgccactcgctcccacgtcccccaggggcccgga
gagatccagctgcacagaggggagcgggtcaaagtgctgtccatcggcgaaggcggattc
tgggagggaaccgtcaaaggtagaaccggctggtttcccgccgactgcgtagaagaggtc
cagatgaggcagtttgacccccgactggagacgagggaggaccgcacgaagaggctgttc
agacactacaccgtcgggtcctacgacaactacacctcctacagtgactacgtgatcgag
gagaaaatcgctgttctgcagaagagagagagtgaaggattcggcttcgtcctcagagga
gcaaaagctgagacgcccatcgaggagttcgcccccacgccagcctttcccgccctccag
tatctggagtcagtcgatcaggggggcgtggcttggagggcggggctaaggacaggagac
ttcttaatagaggtgaacggcacggacgtggtgaaggtgggccaccgccaggtggtctct
ctgatccggcagggaggaagccgcctcctgatgaaggtcgtttctgtttccaggaagtca
gaatcaaacctgatccggaagaaagccccgccccctccaaaacgagcccccagcacctcg
ctgaccctgaggtccaaatccatgacggccgacctggaggacatagccaggaggaggcgt
ttcgagaaactggacgagatgttggctgcaggtcaacaggaagtggtccttcgaggacgc
ccgaccgacgactttcgcgccgcgaccgtcaaacagcgaccgaccagccggcgcatcacg
caggccgagattaactcgctgttcgagcgccagggtctggttcctccgtccgctccggag
aagagcaccatggcgttaccgcgggggatgtccaggaccaagagcttcgggacgccggag
gacgaccgcatcactgctctgatcaacgagagccgctttccacggagctcctccctgacg
gacagcttcatccccccgcctcctcagacggccccgcccccgcctccctctgccgcctcc
atctccgccctttatatgttcgactccggccctcccccctcttttctgccgccgcctcca
ccagccagaggggaggggcttacccgctccagcttcaaacccggggcagaaccgaggctc
caggagctgtccgactcaccggcgagaagccacgcccacgccgagcggcaacggaaagcc
aggtcaatgatcatcctccaggacacgacggcgccgccacccgccatgcaggctgacggg
cacgtgactcccggcgcacacgcactgcacaccgccacccacacggcgacgcacactctc
cacaccgccacacacacctccacgctgtccctccacagcacaagcccctccctcggccac
tcccctctgtcaaggcgccgaggacggccgatagaaaacccttatgccaatgtggggcaa
caggctccgcccactaaacctcagaggaggaagtccccgctgctgaagcaacttcctgtt
gaggaacaaggtctgggaatcagagaccacgacccctccaagccagatggaggggggccc
cccagccccagcagggcggagctataccagcagcaggtcctgtcggagcgcgctcgggtc
cagggccgccgctcctcccttttcttgtcggtggagggcgcggggtcagataatcaggcc
ccgcccctcctgactcaaagccattccatggatgacctcggagagctccccccacccgcc
ccggtcctgtcgccttcgccaaccccgcacaccttccttcacccgctgacggggaagcct
ctggacccgtcctcgccactcgccctggcgctcgctgcacgggagcgagctctgaccgcc
cgcacgccgagtccagagcctcggaccaaacacgcctccgcctccaccacccccatcccc
acgccggcggcaagccccgagggccggcacaagcgcacgcccctgaccactccccagagc
agcccagagccgcggtccaaacgcagcacgccgcagatgagcccggagcaacgcgccaag
cgcaccaccccccagaccagccccgagctgcggcacaagcggatgaccccgcccctgttt
cccgatggccaggtggagcgacccgagacagagggaggagtcacctcaccggctgccccc
tcaccagagcgatggaggccctgccctctgccagcgctggccaatgagagccactctcct
ctgattgacaggcgcaggagcctgacggtgggcagctcagaggaagagggcggggcttac
acagtgaccctcccgcccgccttgttgtcgtccagtgatgaggagacgagggaggagctg
cgcaggattggtctggtgactcctccccctgccttcgccagcccccccgcccctcctccc
ccgtcgtccctcgccctgttgcctcggcggtccggagaggggggaggggagagcggtccc
gagtccctcggtaaacgaggcgatgaggaggaggcgggtgacgagcgcctccacgagggc
tccacgtcccccagctccctccctccctccatcaccctggcctccccctctgctcagacc
accccctcctctccgcctgccacccacccctctccctcctccaccgccacctccccgtca
ggtctgaagccccgcctccgctcccccatcgggcggggccgctccgccctgcgggacccc
ctgctgaagcagtcgtccgacagtgaactcctcccctccgtcgcctccgcctcctccccc
tcctcccccctctgctcctcccccaccagcggcagcagccgccagccgcgctacctgttc
cagaggcggtccaagctgtgggggggcggggacgacgagcggcgcggattctacccggag
gacggcgtaggccgtccggcggcgctgggggggcaggggtccgggtccgccgtggacctc
acgagccgctcggcgtcggcgctggagctgagcggcagagccgggtccgggctggacctg
gccaaccggctgcagctgctgaacaaggacagccactccctgggggaggagccaagccca
ctggacccaggccggcgctcgccggtgggaggagccaggttgttctccagcctcggggag
ctgcacaccatctcccagcgaggatacggcgccagttacacggtccgacccggaagtcga
tacccagtgacccgccgaagcccctccccctccccttccccctctgacagatcaataggg
ctcgcctcctcccccgccccggagaggcccgacctgagctcgggtcggggcctcaccatc
ctgaagtcgtccagcctcagcctcccgtcagaacccaaggaggtccgcttcgtgatgcgg
agcgccagtgcacgaaccagatcccgctctccttccccgtcaccccacgcctccccctgc
ccctccccggtcctcagcgggcccttgttggccctgcggccctggcggcagcggcccctc
agcctgtggaacaagtacgacgtgggtgactggttggagagcatgggcctggccgaacac
cgccagcgcttccaggagcacgagatcgagggctcgcacctgccggccctcaccaaggac
gactacatcgagctgggggtcaccagactggggcaccggatcaacatcgagcgggccctc
cggcagctgttggaggggtccacttga
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integrated database retrieval system
