Oryzias melastigma (Indian medaka): 112154339
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Entry
112154339 CDS
T07439
Symbol
vps8
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
112154339 (vps8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oml04131
]
112154339 (vps8)
Membrane trafficking [BR:
oml04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
112154339 (vps8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
VPS8_N
zf_RING_Vps8
TPR_Vps41
Clathrin
WD40_CDC20-Fz
TPR_VPS8_2
zf-RING_Vps41
zf-RING_5
zf-RING_UBOX
zf_RING_Vps8_fungal
zf-RING_11
ANAPC4_WD40
WD40_Prp19
zf-RING_2
zf-C3H2C3
Beta-prop_EML
zf-C3HC4
WDR55
DUF1841
EIF3I
Prok-RING_1
Motif
Other DBs
NCBI-GeneID:
112154339
NCBI-ProteinID:
XP_024140976
Ensembl:
ENSOMEG00000002421
LinkDB
All DBs
Position
LG19:21842277..21874677
Genome browser
AA seq
1390 aa
AA seq
DB search
MAESPDPNSLFSSSSQLHLMEEEAIDDKEFDIPQVDTPPTLESILSQVEEGEEAFILEDT
MNTDNMDAHSYDTSSLASSDSGDPAHPKRRKRAQDASVAASGSVLRLSLLKGISAQIVAA
ADKVDAGLPTAVTMNSLIAVGTSHGLAFVFDTNQALRLCLGSKATGAEFGAVSALSINHN
CSRLLCGFAKGQITMWDLANGKLLRTITDAHPPGTAILHIKFTDDPTLAVCNDSGGSVFE
LAFRRLMGMRSCDSRCLFSGSKGEVCCIEPLRSPPDYREHPITQYSLLAMASLTKILVIG
LKPTLNVWMTFPYNKSDPSNVPQLAWHFVSVQKMVNPILAFCKGDTVHFLLVKKEEMGTI
HVIKQRQLHLSCDIISLNWINSRTLVLVDSQEKLHVVDRPTQEVLETLDLEQVQLVYNSR
HFKSLATGGNVSQALALVGEKACYQSVSSYAGQILCLGTKSAHIMTLRNWNERIDLLLKQ
EHFVEALGLAWSFHEGTAKAVVGLHGDPAKRKAVVSDKMVEMLLQFSEHALKKCPEQGKA
QSTEQNFQEVVPVLLEYSLLLHRLDLLFDELYPRLAVSPVAKAIFLESLESHIVSTRLDH
LPTPVIKDLLSHYHTNGMMDSLERCIVHLDVTSLDIQQVVQVCWTNRLYDAVIYIYNRGM
NDFITPMEKLFAAIEPAVRGGRSLTDEDVVMGNKLLVYISCCLAGRAYPLGDIPADLVVQ
VKNQVFDFLIRLHSNDSSEEEDVFPFIRTLLHFDTREFLNVLSMTFEDFKNDKQALEYQQ
RIVDILLQVMVDNKDFTPSQVGGLFTFLARQLVKPDNTLFVNRKLFDQVLEFLCCPDNEC
RQAERQQVLLDLLQVEGVVQFNEDRLLVLAEKAQFYQICEFLFEKKHLYDRIIDCYLKDP
VRQCEIFSYIHNLLSMPGYSSEEKQRVRSKVLQHVQELVSLDPTKSADLVSCHFSDSVSS
IVSELQDQQLLFSFLRCLLEPREGPGPALCPDQDLHELLLDLMCQFDPQQLLAFLHTSQH
YRLEEAILITEKHGCVEARASLLEKKGDVHGAFAGLLQMLKDRLHHFASESLAETSNSPE
HCESLRRVQESLDVVLAFSHRNCSSLDQEQRKTLWFPILDALMASQKEVKRPTTSFEGLK
EMTLTVLNCMSSFISLPAIIQQILQDPVYGRGKLSEIQGLILGMLDTFNYEQTLLETTTN
LLNYDLHWSLAHLRAAVTRGLHPLQDHCNICLQHYKRRPDSGEEVVVFSCGHLYHRWCLQ
QKDCGSSSASELQQWRCYKCSSSHMQKRGPPGRPNRIRSTSLAQTHVASGHHDAAAATHK
KKVLAAAVLDLQQEQSWDLTRCLFRGPSRLTILAEPPHGDASEKTALHPPGQEGSETFFL
KLAPPPLFED
NT seq
4173 nt
NT seq
+upstream
nt +downstream
nt
atggcagagtctccagacccgaacagcctcttctcctcttcttcacagctccacctgatg
gaggaggaggcgattgatgataaggagtttgacattccccaggtggacacgccccccacg
ctggagagtatcctcagtcaggtggaggagggcgaggaggcttttattttggaggacacc
atgaacacagacaacatggacgcccactcctatgacacctcctccctcgccagctccgac
agcggagacccagcccaccccaaacggaggaagagggctcaggatgccagtgtggcggcc
agcggctccgtcctccgtctcagcctcctgaagggcatctctgctcagattgtggccgcc
gctgacaaagtggacgccggcctgccgactgccgtgaccatgaacagcctgattgctgta
gggacatctcatggactggcgtttgtcttcgataccaaccaggctctgcgcttgtgtctg
ggctccaaggcgaccggagctgagtttggagccgtctctgctctcagcatcaaccacaac
tgctcccgcctcctctgtgggttcgctaaaggacagattaccatgtgggatctggccaat
gggaagcttctaaggaccatcactgatgctcatcctccaggaacggccatacttcacatt
aagttcaccgatgacccgactctggccgtctgcaacgacagtggaggatctgtgtttgaa
ctggccttcaggaggttgatggggatgcgctcatgtgactccagatgcctcttcagcggc
tctaaaggagaagtgtgctgcattgaacctctgcgctctcctccagattacagggaacat
cccatcacacagtattctctgctggcaatggcctcgctcaccaagattctggtgatcgga
ctgaaacccacactaaacgtttggatgacttttccttacaacaagtcagatccgtccaac
gttccccagctggcctggcacttcgtttccgtccagaagatggtcaacccaatcctggct
ttctgtaaaggagacactgtccatttcctcctggtaaagaaggaagagatggggacgatc
catgtgataaaacagcgtcagctgcacctgagctgtgatattatcagcctaaattggatc
aacagtcgcacgctggttctggtggacagccaagaaaagcttcacgttgtagacagaccc
actcaggaggttctggagacgctggacctggagcaggtgcagctggtctacaacagccgg
catttcaagtcattggccaccggagggaatgtctcacaagctctggctctggttggggag
aaggcctgctaccagtctgtttcaagctatgcaggacagatcctgtgtttgggcactaag
tcagctcacatcatgactctgaggaactggaacgagcgcatcgacctgctgctgaaacaa
gaacattttgtggaggcgttgggcctggcgtggtcattccacgaaggaaccgccaaggcc
gtggtcggcctccatggagatccagccaaaaggaaggccgtggtcagcgacaaaatggtg
gagatgctgcttcagttttcggagcacgccctgaaaaagtgtccagaacaaggaaaggcc
caaagcaccgagcagaacttccaggaggttgttccagtgctgctggagtactctctgctg
ctgcacaggctggacctgctgtttgacgagctgtacccccggctggcagtgagcccggtc
gccaaagccatctttctggaatcacttgagtcacacatcgtcagcacccgcctcgatcac
ctccccactcccgtcataaaggacctcctctcccactaccacaccaacgggatgatggac
agcctggagagatgcatcgtccacctggatgtgaccagcctggacattcagcaggtggtc
caagtgtgctggacgaaccgtctctacgacgccgtgatctacatctacaaccgtggaatg
aatgacttcatcactccgatggagaaactgtttgcagccattgaacctgcagtgagggga
gggaggagcctgacagatgaagacgtggtaatggggaacaaactgctcgtctacatcagc
tgttgtcttgcaggaagagcatatccgcttggagacatccccgctgaccttgtggttcag
gttaaaaaccaggtctttgattttctgatccgtcttcattctaacgactcatcggaggag
gaggatgttttcccttttattcggacactcctccactttgacactcgggagtttctcaac
gtgctttccatgacatttgaagacttcaagaatgacaagcaggctctggagtaccagcag
aggatagtagatatcttacttcaggtgatggtggacaacaaggactttaccccgtcccag
gtgggcgggctcttcacctttctggcgcgtcagctggtcaagccagacaacacgctcttc
gtgaacaggaagctctttgaccaggtgctggagttcctgtgttgtccagacaatgaatgt
cggcaggcggaacggcagcaggttctgctggacctgctgcaggtggagggcgtggtccag
ttcaatgaagaccgcctcctcgttctggcagagaaggctcagttctaccaaatctgtgag
ttcctttttgagaaaaaacatctgtatgatcggatcatcgactgctacctgaaagacccg
gtccgacagtgtgagatcttcagctacatccacaacctgctgtccatgcccggatacagc
tccgaggagaagcagagagtccggagcaaagtgctgcagcacgtacaggagctggtgagt
ctggaccccacgaagtccgctgacctggtgtcgtgtcacttctctgactctgtgagctcc
atcgtctcagaacttcaggatcagcagctgctcttcagcttcctcaggtgtctgctggag
ccacgggaggggccggggcccgctctgtgtcccgatcaggacctccatgaactcctgctg
gatttgatgtgccagtttgacccccagcagctgctggccttcctgcacacgtctcagcac
tacagactggaggaagccatattgataacagaaaagcacggctgcgttgaagcgcgagca
tccctgctggagaagaaaggtgacgttcatggagcgtttgctggcctactgcagatgctg
aaggacaggttgcaccactttgcttcagagagtctcgcagagacgagcaacagtccggag
cattgtgagtctctgaggagagtccaggagagcctggatgtcgtcctcgccttcagtcat
cggaactgttccagcctggaccaggagcagaggaagactctgtggtttccgattctggat
gctttgatggcttctcagaaggaagtgaagaggcccacaacatcttttgagggtttgaag
gagatgacgctgacggtcctgaactgcatgagcagcttcatttctctgccagccatcatc
cagcagatcctgcaggatccggtctatggaagaggaaagctgtccgagattcaaggactc
atcctgggaatgctggatacctttaactacgagcagactctacttgaaacgaccaccaac
ctgctcaactatgacctgcactggtctctggctcacctgcgcgccgccgtcacacgcgga
ctccacccacttcaagaccactgcaacatctgcctgcagcactacaagaggaggccagac
tccggggaggaggtcgtcgtgttcagctgtggacatctgtatcaccggtggtgtctgcag
cagaaggactgtggttccagctcggcttcagagctgcagcagtggaggtgctacaagtgt
tcctccagccacatgcagaagagaggtcctccaggaagacccaaccgcatccgcagcacc
tctctggctcagactcatgttgcatccggccatcacgacgcagcagcagcaacgcacaag
aaaaaggttctggctgcagccgtgttggacctccagcaggagcagtcctgggatctgacc
cgctgtctgttcagaggaccgtccaggctgaccatcctcgctgagcccccccacggagac
gcctcagagaagacggcccttcaccccccaggccaagaaggcagcgagactttcttcctt
aagctggcccccccacctctgtttgaggactag
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integrated database retrieval system
