Oryzias melastigma (Indian medaka): 112154484
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Entry
112154484 CDS
T07439
Symbol
si:ch211-141o9.10
Name
(RefSeq) probable endonuclease 4
KO
K10771
AP endonuclease 1 [EC:
3.1.11.2
]
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
112154484 (si:ch211-141o9.10)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oml03400
]
112154484 (si:ch211-141o9.10)
Enzymes [BR:
oml01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
112154484 (si:ch211-141o9.10)
DNA repair and recombination proteins [BR:
oml03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
112154484 (si:ch211-141o9.10)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AP_endonuc_2
Ntox15
Motif
Other DBs
NCBI-GeneID:
112154484
NCBI-ProteinID:
XP_024141221
Ensembl:
ENSOMEG00000008304
UniProt:
A0A3B3BNN4
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Position
LG19:complement(898420..903868)
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AA seq
324 aa
AA seq
DB search
MGPRKRGARKRKSEDALVEEDSKNTERKAEEEEGDAGRRRKKFIGAHVGIQGGVWKAVDS
CLQMGGNSFALFLGSQRSWKRPALDPSAAEKFRDQCSSHGFDPAHILPHGSYLMNCGSPK
EDVFAKSQELLVDELSRCHMLGLKLYNFHPGSSLGTITTEQCVEKIAGAINHAHQQIPDV
VTVLENMSGQGSTVGGKFSELRSIIDRVRDQSRVGVCLDTCHAFSAGYDLAAEGGVKAML
DQFDQEVGRHYLRALHLNDSKGQLGCHLDRHEDIGKGNIGISAFRDIVNEPRLENIPLIL
ETPGRPGFEYSDQIQLLRSLCEEK
NT seq
975 nt
NT seq
+upstream
nt +downstream
nt
atgggtccgagaaaaagaggggcgcgaaagaggaaaagcgaagatgctttggtggaggaa
gacagcaaaaacaccgagaggaaggctgaagaagaggagggagacgcggggaggaggagg
aagaagttcatcggagctcacgttggaattcaaggcggggtatggaaagccgtagactcg
tgtctacagatgggaggcaacagtttcgccttgtttctgggttctcagcgctcctggaag
aggcctgctctggatccatctgctgcagaaaagttccgggatcagtgttcctcacacgga
tttgatcccgcccacatcctgccccacggctcctatctgatgaactgtggatctcctaaa
gaggatgtgtttgcgaagagccaggagctgctggtggatgagctcagccgctgccacatg
ctgggcctgaagctgtataacttccatcctggctcctcactggggactatcaccactgaa
cagtgtgtggaaaagatagctggagccattaaccacgcccaccagcaaatacctgatgtg
gttacagtgctggagaacatgagtggccagggcagcacagtgggcggtaagttctcagaa
ctcaggagcatcatcgacagagtgagagaccagagcagagtaggagtgtgtctggatacc
tgtcacgccttttcagcaggctatgatctggcagcagagggaggggttaaagccatgctg
gatcagtttgatcaggaagtagggcgtcactatctcagagcactccacctcaatgattcc
aaaggtcaactcggctgtcatcttgatcggcatgaagatataggtaaaggtaacattggg
atctctgcgttccgagacatcgtcaatgaacccagactggagaacatccctctgattctg
gagacgccgggacggcctggatttgaatattctgatcaaattcagcttctgcgatccttg
tgtgaagaaaaatga
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