Oryzias melastigma (Indian medaka): 112154539
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Entry
112154539 CDS
T07439
Symbol
smarcd2
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
112154539 (smarcd2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oml03021
]
112154539 (smarcd2)
03036 Chromosome and associated proteins [BR:
oml03036
]
112154539 (smarcd2)
Transcription machinery [BR:
oml03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
112154539 (smarcd2)
Chromosome and associated proteins [BR:
oml03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
112154539 (smarcd2)
PBAF complex
112154539 (smarcd2)
GBAF(ncBAF) complex
112154539 (smarcd2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
CTV_P23
Motif
Other DBs
NCBI-GeneID:
112154539
NCBI-ProteinID:
XP_024141320
Ensembl:
ENSOMEG00000022684
LinkDB
All DBs
Position
LG19:complement(7972244..7985453)
Genome browser
AA seq
498 aa
AA seq
DB search
MMASKGGFTGPPMNPNMNPMNVGHPAGMRMPGMLQPPTGYPRSIPQFAQRPGMPPGRMGG
PMGVMGGQMPGPSYGGGSIPMRPGMGPPSMDASRKRFLHQQQQQEALGSLRRGPKRRKMA
DKVLPQRIRDLVPESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPIMQKRKLRIYISNT
FTPSKPEGEESEKVSSWELRVEGKLLEEAGKQKRKFSSFFKSLVIELDKELYGPDNHLVE
WHRMPTTQETDGFQVKRPGDVNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRASIMQ
ALWLYIKNNKLQDSHEKEFINCNRYFRQIFNCPRMRFSEIPMKLAGLLQHPDPIVINHII
SVDPTDQKKTACYDIDVEVDDPLKTQMNSFLSSANSQQEIAALEMKIHETIEYINQLKTE
RDFMLSFSNSPQEFIQDWLKSQCRDLKLMTDVTGNPEEERRAEFYEAPWMPEAVGRYVYS
KVQQRRQELEQVLGIRLT
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atgatggcatcgaaaggggggttcacgggtcctccgatgaatccgaacatgaaccccatg
aatgttggacaccccgcggggatgagaatgcccggaatgctgcagccaccgacgggttat
ccccgaagtattccccagtttgcccagcgtcctggaatgccacccggccgaatggggggt
cctatgggggtaatggggggtcagatgcccggtccctcttacggtggcggtagcattccc
atgcggccaggtatgggcccccccagcatggacgcgtcgagaaagcgttttctccatcag
cagcagcagcaagaggcgctgggaagcctcagacgaggacccaaaagacgcaaaatggcc
gacaaggttttgccacagaggatccgagacctggtccccgagtcccaggcttacatggac
ctcctggcttttgaaaggaaactggatcaaaccatcgctcggaagcgaatggagatccag
gaggccatcaagaagcccattatgcaaaagcgcaagctgaggatctacatttccaacact
ttcactccaagcaagcccgagggcgaggagtcggagaaggtctcctcctgggagctgaga
gtggaaggcaaactcctggaggaagccggcaagcagaagaggaagttctcatctttcttc
aaaagcctggtgatcgagctcgacaaggagctctacgggcccgacaatcatttagtggag
tggcacaggatgcccaccactcaggagaccgatggtttccaggtcaaaagacccggcgac
gtgaacgttaaatgcactcttctgctcatgctcgaccatcagcccccccagtacaagctg
gacccccgtctggctcgtctgctgggcgtgcacacccagactcgggccagcatcatgcag
gccctgtggctttacatcaagaacaacaagctgcaggacagccacgagaaggagttcatc
aactgcaaccgctatttccgacagatcttcaactgcccacgcatgaggttctccgagatt
cccatgaagctggcggggctgctgcagcaccccgaccccatcgtcatcaatcacatcatc
agcgtggaccccacagaccagaagaaaaccgcctgctacgacatcgacgtggaggtggac
gaccctctgaagacccagatgaacagcttcctgtcctccgccaacagccagcaggaaatc
gccgctctggaaatgaagattcatgaaacaattgagtacatcaaccaactcaagacagag
agagacttcatgctgagcttcagcaacagtcctcaggagttcatccaggactggctcaag
tctcagtgcagagatctgaagttgatgactgatgtgaccggaaacccagaagaggagagg
agggcggagttttacgaggcgccctggatgccagaggcagtgggcagatacgtctactcc
aaagtgcagcagcgaagacaagagctggagcaggtgttgggaatccgactcacctga
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integrated database retrieval system
