Oryzias melastigma (Indian medaka): 112154807
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Entry
112154807 CDS
T07439
Symbol
ddx3xa
Name
(RefSeq) DEAD-box helicase 3 X-linked a isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oml03019
]
112154807 (ddx3xa)
03041 Spliceosome [BR:
oml03041
]
112154807 (ddx3xa)
03036 Chromosome and associated proteins [BR:
oml03036
]
112154807 (ddx3xa)
Enzymes [BR:
oml01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
112154807 (ddx3xa)
Messenger RNA biogenesis [BR:
oml03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
112154807 (ddx3xa)
mRNA cycle factors
Common to processing body (P body) and stress granule
112154807 (ddx3xa)
Spliceosome [BR:
oml03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
112154807 (ddx3xa)
Chromosome and associated proteins [BR:
oml03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
112154807 (ddx3xa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-GeneID:
112154807
NCBI-ProteinID:
XP_024141748
Ensembl:
ENSOMEG00000007983
LinkDB
All DBs
Position
LG21:1041278..1052864
Genome browser
AA seq
730 aa
AA seq
DB search
MSHVVVDNPHGLDQQLAALDLNSADGQGGGTGRRYIPPHLRNKDAARNAGNAFSTGRQCG
YSMAPVNFCYPGLASQELAFYHAYSDAPGWDGGRTNGFVNGYHDNRANGGFGGRGSSRND
RAFGGYENKEGGWGGASRDSYNSFGGRNDRSKSSFFNDRGSGSRGRYERGGFSGGGSSRW
GEDSREDDWSKPTAPNERLEHELFSASNTGINFEKYDDIPVEATGSNCPPHIESFHDVDM
GEIIMGNITLSRYTRPTPVQKHAIPIIKTKRDLMACAQTGSGKTAAFLLPVLSQIYTDGP
GDALQAAKNSGQDNGRYGRRKQYPLSLVLAPTRELALQIYDEARKFAYRSRVRPCVVYGG
ADIGQQIRELERGCHLLVATPGRLVDMMERGKIGLDYCNYLVLDEADRMLDMGFEPQIRR
IVEQDTMPPKGIRQTMMFSATFPKEIQILARDFLEDYIFLAVGRVGSTSENITQKVVWVE
ETDKRSFLLDLLNATVIPSEVQENITETPEKMGKDSLTLVFVETKKGADALEDFLYREGY
ACTSIHGDRSQRDREEALHQFRSGRCPILVATAVAARGLDISNVKHVINFDLPSDIEEYV
HRIGRTGRVGNLGLATSFFNDKNSNITKDLLDILVEAKQEVPSWLESLAYEHQHKSTNRG
RKRFSGGFGARDYRQTPGGAGGFNSNRSGRSTGGHGGNRGFGGGFGGNFYSNDGYGGNYS
HTGSVDWWGN
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggtcgttgataatccacacggtctagatcagcagcttgctgccctagac
ttaaactctgctgacggacaaggcggcggaactggcaggcgttacattccacctcattta
aggaacaaagatgctgccagaaacgcaggaaatgctttttccactggtagacagtgcggt
tattcaatggcaccagtaaatttctgttacccaggactggcctctcaggagcttgccttt
taccatgcctacagtgatgcacctggatgggacggcggccgcaccaatggatttgtgaat
ggttaccacgacaatcgtgcaaacgggggctttggtggacgtggatcctctcgcaatgat
agagcttttggtggttatgagaacaaggagggaggctggggaggagcatccagagactcc
tacaacagctttggaggacgcaacgacaggtccaagtcgtccttcttcaacgacagagga
tcaggctcaagaggaagatacgagcgtgggggcttcagcgggggaggaagtagccgctgg
ggggaagactccagagaagacgactggtccaaacctaccgctcccaatgagcgcttggaa
catgaacttttctctgcaagcaacactggaataaactttgagaaatacgatgatattcct
gtggaggctactggaagcaactgcccaccccacattgagagtttccatgatgtggacatg
ggggagatcatcatgggcaacatcacgttgagccgttacactcggcccactccggtccag
aagcacgctatcccaatcatcaagaccaagagagacttgatggcctgcgctcagaccggt
tctggaaagacagctgcgttcttgctgccagtgctgagtcagatctacaccgacggacca
ggagatgcactgcaagctgcaaagaacagcggacaggacaatggccgttacggacgccgt
aaacaataccccctttccctggttctggctccaaccagagagctggctctgcagatctat
gatgaggccaggaagtttgcataccgctctcgtgtgcgtccctgcgtggtttacggaggt
gccgacatagggcagcagatcagggaactggagaggggctgccacctactggtggccaca
cctggacgtttggttgatatgatggaaagaggcaagatcggcctggactactgcaactac
cttgttctggatgaggctgaccgcatgttggacatggggtttgagccacagatcagacgt
attgtggagcaggacaccatgccgcctaaaggcatccgacaaaccatgatgttcagcgcc
actttccccaaagagattcagattctggctcgtgacttcctggaggattacattttcctg
gcggtgggtcgtgttgggtccacttcagaaaacatcacccagaaggtggtttgggtcgag
gagacggataagcgctcatttctcctggatctgctcaatgcaacagttattccaagtgag
gttcaggaaaatatcacagagactccagagaaaatgggcaaagactccttgactctggtc
tttgtggaaacgaagaaaggagctgatgctctggaggacttcctgtaccgtgaaggttat
gcctgcaccagcatccatggcgaccgctcccagcgggacagagaggaggctctgcatcag
ttccgctccggacgttgccccatcctagtggctacagctgtggctgctcgaggtctggat
ataagcaacgtgaaacatgtcatcaactttgacctgcccagtgacattgaggagtacgtt
caccgtattggccgtacgggacgtgtgggcaaccttggtctggccacgtcgttcttcaac
gacaaaaacagcaacataaccaaagatttgcttgacatcttggtcgaggccaagcaggag
gttccctcctggcttgaaagcttggcctatgagcaccagcacaagagcaccaaccgaggc
cggaagaggttctctggtggctttggagccagagattaccgtcagacacccggcggcgct
ggaggcttcaacagcaaccgttcagggcgcagcactggaggccatggagggaaccgcggc
tttggaggtggctttggtggaaacttctacagcaacgatggctacggaggaaactacagc
cacaccggtagtgtggattggtgggggaactag
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