Oryzias melastigma (Indian medaka): 112154898
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Entry
112154898 CDS
T07439
Name
(RefSeq) CCR4-NOT transcription complex subunit 4 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112154898
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oml03000
]
112154898
03019 Messenger RNA biogenesis [BR:
oml03019
]
112154898
04121 Ubiquitin system [BR:
oml04121
]
112154898
Enzymes [BR:
oml01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
112154898
Transcription factors [BR:
oml03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
112154898
Messenger RNA biogenesis [BR:
oml03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112154898
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
112154898
Ubiquitin system [BR:
oml04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
112154898
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
zf-CCCH_2
zf-CCCH_4
RRM_1
Torus
zf-UDP
zf-CCCH_3
DZR_2
RDD1
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
112154898
NCBI-ProteinID:
XP_024141908
LinkDB
All DBs
Position
LG21:complement(19953333..19960668)
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AA seq
868 aa
AA seq
DB search
MSHSPELKDDPMECPLCMEPLEIDDVNFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
PEDPAVYKPLSQEEIQRIKNEKKQKQNEKKQKVTENRKHLASVRVVQRNLVFVVGLSQRL
ADPEVLKRPEYFGRFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
VDGRTLKASLGTTKYCSYFLKSMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
LQDLYKINPGFLQPPACGTEKSKNKPNSTQRSNSSNGKDGWPTLSGHSKLPNGLSEDRKS
PPLLDYLDQEANNSDGLETDLGPGQLTALSPFPSNCDSNSPNDKPSDSIGMVNGDTIQQM
PTSDSPSPPPGLTKPVLVVPISMSDLPARSPFEGASAESQSLFSDNSNFKHPNPLPAGLP
PFPSSPRSSSDWPMAPEPQSIFTSDTIPVSSSTDWQAAFGFGSSTKQQDDDLGFDPFDVT
RKALADLIEKELSVQDQSPLSPGPLAQGANHGPNLLPSNPSSSHHFPSGLPRLHQLHHRP
MFSFPSGHNSQASQQQQPPSARHPWMGLPPRNNFTHLNHSAGAASHSNFLDLNLPLQHNT
GLGGIPISENSGSIDGLNVKEWQDGLRALLPNININFGGLPNSSSSSSSSTSSPSQKLQR
TDKLEVCREFQRGNCARGETDCRFAHPSDSPMIDATDNTVTVCMDYIKSRCSREKCKYFH
PPAHLQAKIKSSQQQVSQAGSAASNTAAAMTQSTAKAMKRPLEATVDLGFPHSVLQTLPK
RPALEKSSWASSLLTPNLLHYQQALANTHLQQPAAGFYPTGSVFCMTPANNVVPMMYSAT
PATVSAATTPATSVPYAATPPANQIILK
NT seq
2607 nt
NT seq
+upstream
nt +downstream
nt
atgtcccacagccccgaattaaaggacgaccccatggagtgccctctttgcatggagcca
ctagaaattgatgatgtcaatttctttccttgcacctgtggctatcagatctgccgcttc
tgttggcaccgcatccgcacagatgagaatggcctctgcccggcctgcagaaagccatat
ccagaggaccctgctgtgtacaagcctctgtcacaggaggagatccagaggataaagaat
gaaaagaagcagaaacagaacgagaaaaagcagaaggtgacagaaaatcgcaagcatctg
gccagtgtcagagtggttcaaaggaacctggtttttgtggtggggctctcgcagcgactc
gctgaccccgaggtcctaaaacgtcctgaatattttgggaggtttgggaaaatccataaa
gtggtcatcaacaatagtacatcttatgcaggttcacaggggcccagtgccagcgcttat
gtcacctacatccgctctgaagatgctctaagagcaatacagtgtgtcaacaatgtggtt
gtagatggcagaacacttaaggcttctttaggaacaacaaagtactgcagttacttcctc
aaaagtatgcaatgtccaaaacctgattgtatgtatctacatgaactgggggatgaagcg
gctagctttactaaggaagagatgcaggctgggaaacatcaagagtatgaacagaaactc
ctccaagacctctataaaattaacccaggctttctacaacctccagcttgtgggacagag
aagtcaaagaataaacccaactccacacagagaagcaacagtagtaatggtaaagatggg
tggccaacgctttcaggacatagcaagctgccaaacgggctttcagaagatcgcaagtct
cctccacttctagattatctagatcaagaagctaacaattcagacgggctagaaacagac
ttgggccccggccagcttacggccttgtccccttttccctccaactgtgatagcaacagt
ccaaatgacaagccttcagactcaattggtatggtcaatggagatactatacaacagatg
cccaccagtgactccccctcccctcccccgggtctaaccaaacccgttttggtggtgccc
attagcatgtcggacctcccggcccgctcgccctttgagggtgcatcagctgagtctcag
tccctcttttcagacaacagcaacttcaaacatcccaaccccctccccgccggacttccc
cctttccccagctccccccgcagcagttctgactggcccatggcccccgaaccacagagc
atcttcacatcagacacaataccagtgtcttcttccacagactggcaggcggcctttgga
ttcggctcctccactaaacagcaagacgacgacctgggcttcgatcctttcgacgtcacc
cgcaaggctttggccgacttgatagaaaaggagctgtcggtgcaagaccagagccccctg
tcccccgggcccctcgcccagggggccaaccacggtccaaacctgctaccatccaacccc
agcagctcccaccacttccccagtggcctgccacgccttcatcagcttcatcacagaccc
atgttcagcttccccagcggtcacaacagtcaggccagtcagcagcaacagcccccttct
gctagacacccctggatgggcttaccaccaagaaataacttcacacacttgaaccactca
gccggcgctgcctcacatagtaacttcttggacctgaatttgccccttcagcacaacaca
gggctaggaggaatccccatctcagaaaacagcggctctatagacggcttaaatgtgaaa
gagtggcaggacggcctcagagctcttctacccaacatcaatatcaactttggtggcctc
ccgaactcctcctcctcttcatcctcctctacttcttctccatcgcagaagcttcagcgc
actgacaaattagaggtgtgccgcgagtttcagcgggggaattgtgcgagaggggagacg
gattgccgcttcgctcaccccagcgacagcccgatgattgacgccaccgataacacagtc
actgtttgcatggactacataaagagccgctgctccagggagaagtgcaagtattttcac
ccgcctgcacacttgcaggccaaaatcaaatccagtcagcaacaagtcagtcaggcgggc
agtgctgcctcgaacacagctgcagccatgactcagtcgactgccaaagcaatgaagcga
cccctcgaggcaactgtagacctgggctttcctcatagtgttttgcaaactctaccaaag
agacccgctcttgagaagagcagctgggcgagctctctacttaccccaaatttattgcac
taccaacaagctttggccaacactcatcttcagcagcccgctgcaggattttatcccaca
ggttctgtattttgcatgactccagcaaacaatgttgtccccatgatgtacagtgctacg
cctgctactgtctctgcagcaactactcccgccacaagtgtcccctacgcagcaacacca
ccagccaatcagatcatcctcaagtaa
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