Oryzias melastigma (Indian medaka): 112155026
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Entry
112155026 CDS
T07439
Symbol
upf3a
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03013
Nucleocytoplasmic transport
oml03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112155026 (upf3a)
03015 mRNA surveillance pathway
112155026 (upf3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oml03019
]
112155026 (upf3a)
Messenger RNA biogenesis [BR:
oml03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
112155026 (upf3a)
mRNA cycle factors
P-body specific factors
112155026 (upf3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
112155026
NCBI-ProteinID:
XP_024142156
Ensembl:
ENSOMEG00000014425
LinkDB
All DBs
Position
LG21:6016876..6023967
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AA seq
466 aa
AA seq
DB search
MRSEKDQMAVDKEKSVEIQFRDIPREQENTVGNLKQKEEKKEVFSKVVIRRLPPNLSREQ
LEEQLSPLPSYDYFEFFSADQSLYPHLFSRAYINFKNTEDIVLFRDRFDGYVFIDNKGQE
YPAVVEFAPFQKISKKKLKKKDAKTGSIEEDPEYRRFLENYSCDEEKSMANPETLLGEIE
AKTKELIAKRTTPLLEYIKNKKIEKQRIREEKREERRRRELEKKRLREEEKRKRREEERR
KRKEADKQKKLSDKDIKIKLLKKTDRDDDADSDRMKDKNDSGEADRGRWEKTGGQMKSKE
SKEKGQHESEKEQREQHGRRQRDKDYRGKDEERKRQQHHYDFDKFMRRKDETKWGKGYCQ
DRAKKEGHHHGFSYCADGGDKLGKEEREELSNRKERLRNKVSEKDRPAMQLYQPGARNRK
RMSSSSKAYDCIHLGHSPEHEADHCYEVVTMVMGLDRGFEKSKDEQ
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atgaggtctgaaaaggaccaaatggccgtggacaaggagaaaagcgtcgagatacaattt
agggacattccgagagagcaggagaacacggtcggtaacctcaaacaaaaagaagagaag
aaggaggtcttctcaaaggttgtgatcagaagactgccaccaaacctttccagagaacag
cttgaagaacaactgagtccgctcccatcctacgattactttgagttcttctctgcagat
caaagtctttatccccaccttttctccagagcgtatatcaatttcaaaaacactgaggat
atcgtgttgttcagggatcgatttgacggatatgtctttattgacaacaaaggtcaggaa
tatccagccgtggtggagtttgcccccttccagaagatttccaagaagaaactgaaaaag
aaggatgccaaaactggaagcattgaagaagacccagaatacaggcgattcctggagaac
tactcctgcgatgaggagaagtctatggccaaccccgagactctactgggggagatagaa
gccaaaaccaaagagcttatagccaaacggacaacacccctactggagtacataaaaaat
aagaaaattgaaaaacagagaataagagaggagaaaagagaggagagaagaagaagagag
ctggagaagaaacgactaagggaagaggagaagagaaagagaagagaagaagagaggcgc
aagcgaaaagaggcagacaagcagaagaagctgtcagataaggacatcaaaattaagctc
ctgaagaaaactgacagagatgacgatgccgattccgaccgaatgaaggacaagaacgac
tccggggaggcagacaggggcagatgggagaaaactggaggacaaatgaagtcaaaggaa
tccaaagaaaaagggcagcacgagagcgagaaggagcagagagagcagcacggccgcagg
cagagagacaaagattaccgcggcaaagatgaggagaggaaacggcagcagcaccactac
gactttgacaagttcatgaggaggaaagatgaaacaaagtggggaaagggctactgccaa
gaccgggccaagaaagaaggccaccaccatggattctcttactgcgctgacggcggagac
aaactgggaaaggaggagagggaggagctgagtaacaggaaggaacgcctccgaaacaag
gtgagcgagaaggaccgtccagccatgcagctctaccagcccggggctcgcaacaggaag
cgcatgagctcatccagcaaagcctatgactgcatccatttgggccactcacccgaacat
gaagcggatcattgctatgaggttgttaccatggtaatggggctggataggggctttgag
aaaagcaaagatgaacagtaa
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