Oryzias melastigma (Indian medaka): 112155029 Help Entry 112155029         CDS       T07439                                  Symbol sympk Name (RefSeq) symplekin   KO K06100   symplekin Organism oml  Oryzias melastigma (Indian medaka) Pathway oml03015   mRNA surveillance pathway oml04530   Tight junction Brite KEGG Orthology (KO) [BR:oml00001]  09120 Genetic Information Processing   09122 Translation    03015 mRNA surveillance pathway     112155029 (sympk)  09140 Cellular Processes   09144 Cellular community - eukaryotes    04530 Tight junction     112155029 (sympk)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:oml03021]     112155029 (sympk)    03019 Messenger RNA biogenesis [BR:oml03019]     112155029 (sympk) Transcription machinery [BR:oml03021]  Eukaryotic type   RNA polymerase II system    Other transcription-related factors     Transcription termination factor      112155029 (sympk) Messenger RNA biogenesis [BR:oml03019]  Eukaryotic type   mRNA processing factors    3' end processing     Cleavage stimulation factor (CSTF) complex      112155029 (sympk)     U7-dependent histone pre-mRNA processing factors      112155029 (sympk) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Symplekin_C SYMPK_PTA1_N Adaptin_N HEAT_MROH2B_C Cnd1 Motif Other DBs NCBI-GeneID:  112155029 NCBI-ProteinID:  XP_024142159 Ensembl:  ENSOMEG00000022561 LinkDB All DBs Position LG21:complement(11013172..11022642) Genome browser AA seq 1209 aa AA seqDB search MDISSKGDDTVVDITTSEKVVELLNQASLISTDEKLTTLKQVQELIINKDPSLLDNFLDE IIAFQTDKSIEVKKFVIGFIEEACKRDNELLVRLIANLNMLLKDESVNVVKKAILTLTQL YKVTLQWLVRSKTLSEMQEACWDLITQMKGEVLALLDSDNDGVRTHSIKFTESLIITLSP RTPDSDVPKRQEGDISLDKVPKDHSYIHYGTLCEEGKSALEKLLKFMVHPAISSINLTTA LGSLATIARQRPMFMSEVVQAYETLHANLPPTLAKSQVSSVRKNLKLHLVAVLKHPCSVE FQGQISILLLDLGMPQTEITRYTPAPREPRKRPRYEQYTEGKKVKMEPVLEDDEDKEEPA PLAAPKPVAVPAAQSALDLTAEFLRPLLTPENVANLVLISMVYLPDVMPASFQATYTPVE SAGTDAQIKHLARLMATQMTAAGIGPGLEQSKAKEDEALKEEQNKEDSDGKDILIKRKAP PVMLGQAISVVGGYPEKPSTAEAPAAPKRLPEPILPSAQTKLMGASGRKKVFRLSDVVQP LSDSQNEKLTSSAVKRILHSEKEIAQSGMSHIRVKLLSRLVTQFEGMMKEDVLQFILEDI RSRSDLAFSLLYQEYNTYLSQLPSGLLDSYDQCLFTLLSGLQEKPEQRDGLFTKLVLEAP IITESALEVIRRYCEDESRVYLGMTTLKELIVKRPSRQFQYLHVLLDLSSHEKEKVRTTA LAFLKRMYEKDHLRDYIEKFALNYLQLLVHPNPPSLLFGADKDTEVAAPWTEETVRQCLF LYLSLLPLNHRLVHELASVYTEAIADIKRSVLRAIEQPIRGMGMNSPELLLLVENCPKGA ETLVTRCLHILTDKVPPSPELVERVRDLYHKRVPDVRFLIPVINGLEKNEVIQALPKLIK LNPIVVKEVFNRLLGTQHSEGSSSVAPLTPGDLLIALHNIDSVKCDMKSIIKATNLCFAE KNVYTSEVLAVVMQQLMEQNPLPMLLMRTVIQSLTMYPRLGGFVMNILSRLIVKQVWKYP KVWEGFVKCCQRTKPQSYSVLLQLPPAQLTSVFERCPEMRAPLLQHVLSFTPHQQAHIPS SIMAVLEAHKKPEPSPVEKEMEHPPVIEETHFAVQKEVEMPVQQEPVVIKDDEEPMEQGE SEPVILEETGESISQVDSERDIDTPPPPPETPEESMEESHPETSDQEPVKEAEVDISDAE AGTGPEDVE NT seq 3630 nt NT seq  +upstreamnt  +downstreamnt atggacatttcttctaagggggatgacacagtggtcgatattaccactagtgaaaaggtg gtggagcttctgaatcaagcttctctcatatccactgatgaaaagctgactactctaaaa caggttcaggagctcatcatcaacaaggatccgtcccttcttgacaactttttggatgag ataatcgcgtttcagacggacaaatcaatcgaagtgaaaaagtttgtcattggatttata gaggaagcatgtaaaagggacaatgagctccttgttagactcatcgccaatctaaacatg ctgctgaaggatgaaagtgtaaatgtggtgaagaaagccattctgactctcactcagctc tacaaagtaacattacagtggttggtccgctcaaaaaccctgtcagaaatgcaggaggcc tgctgggacttgatcactcaaatgaaaggggaagtgctggccctgctggactctgacaat gatggcgttcgcactcacagcatcaaattcacagaatctttaatcatcactctttcaccg cggacgcctgactcagatgttcccaaacgccaggagggcgacattagccttgacaaagtt cccaaagaccactcgtacattcactatggtactttgtgtgaagaaggaaagagtgcactg gaaaagctgttaaaattcatggtccatccagctatatccagcattaacctcaccactgct ttgggttctttggcaacgattgcccgtcagagaccaatgttcatgtcagaagtggtccaa gcatatgagaccctccacgctaaccttccccccactctggccaaatctcaggttagcagt gttcgaaaaaatttgaagctgcacttagtggcagttctcaaacatccatgtagcgtggag ttccagggtcagatcagcattttgctgctggatctgggaatgcctcaaacggagataacg cgatacactcctgcgccgcgagagccgcgcaagaggcctcgctatgagcaatacacagaa ggaaagaaggtcaagatggaaccggttcttgaagatgatgaagataaggaggagccggcc cccctcgcggccccaaagccagtcgccgttcctgccgcgcagtctgccctcgacctcacg gctgagttccttcgcccgctgctaactcctgaaaatgtcgccaacctcgtgctcatcagc atggtgtatctgcctgatgtgatgccagcatctttccaggccacatacacacctgtggaa tctgcaggtactgacgcccagattaaacatctggccaggttgatggctacacagatgact gcagctggaattggtccaggtcttgaacaaagcaaagcaaaggaggatgaagctctcaaa gaggagcagaacaaggaagactctgacgggaaagacattctcatcaaacgcaaagctcct cctgtgatgttgggccaagccatctctgtcgttggaggttaccctgaaaagccttcgact gcagaagctccagccgcaccaaagagacttccagagcccatccttccatctgcacaaacc aagttgatgggggcgagcggtagaaaaaaagtcttccgcttgtcagatgttgttcagcct ctatcagacagccagaatgagaagttgacttcgagcgccgtgaagcgcattctacattca gaaaaagaaatcgcacaaagtggaatgtcccacatcagagtcaagctcctctccaggctt gtgacgcagtttgaaggaatgatgaaagaggacgtgctacaatttatcttagaggacatc aggtcaaggagcgatctggccttttctctgctctaccaagagtacaacacgtacctcagc cagctcccttcaggcctgctggacagctatgatcaatgtcttttcactctgctgtcaggc ctgcaggagaagcctgagcagagggatgggcttttcaccaagctggtactggaggctccc attataacagaatctgcattagaagtaattcggcgttactgtgaggatgagtctcgagta tatttaggaatgacgactctgaaggagctcattgtcaagcggccctccaggcagtttcag tatctgcacgtccttctggatctcagctcccacgagaaagagaaggtgcgcaccactgcc ttggctttcctgaagcgcatgtacgagaaagatcatctgagggattacatcgaaaagttt gctctgaattacctccagcttctggttcaccccaacccgccctctttgctctttggagcc gataaggacacagaggtggctgccccctggactgaagagacagtgagacagtgtcttttc ctttacctgtccctgcttcctttgaaccaccggctggtccacgagctcgcttccgtctac accgaagccattgctgacatcaaacgcagcgtcctgcgagcgatagagcagcctattcgt ggaatggggatgaattctccagagctgctactcttggttgaaaactgtcctaaaggagca gagactctggtcactcgctgcctgcacattttgacagataaagtgccaccatcgccagag ctggtggagagggtgcgagacctttaccacaaaagagtgccggatgttcgcttcctaatc cccgtcataaatggccttgaaaagaatgaagtcatccaggctctccctaaactcatcaaa cttaacccgattgttgtgaaggaagtcttcaacagacttctgggaactcagcacagtgag ggaagttcgtctgttgcacctctcactccaggggacctgctcattgctttacacaatatt gactcagtcaaatgtgatatgaaatctatcattaaagctaccaacctgtgctttgcggag aagaatgtgtacacctctgaggtcctggcggtggtcatgcagcagctgatggagcagaat cctctccctatgcttctcatgcgcaccgtcatccagtctctcaccatgtacccccgactg ggaggatttgtcatgaatatcctgtcccgccttattgtcaagcaggtgtggaaatatccc aaagtatgggaaggtttcgtcaagtgctgccaaagaacgaagcctcagtcttacagcgta ctgctgcagctcccacctgcacagctgaccagcgtgtttgaacgctgtccggaaatgaga gcgcctcttctgcagcatgtcctctccttcacacctcatcagcaagctcacataccttcc tccatcatggcagtcctggaggcccataaaaaaccagaaccaagtcctgtggagaaagag atggagcatcctccagtaatagaagaaactcatttcgctgtgcagaaagaggtagaaatg cccgttcagcaagagccagtcgtcattaaagatgatgaagaaccgatggaacaaggggaa tcagaaccagtgatactagaagaaacaggggaaagcatttcacaggtggattcagaaaga gacattgacacaccaccgcctccaccagagacgcctgaagagtcgatggaggaatcccat cctgaaacctcagaccaggagccagtcaaagaggctgaggttgacatcagtgatgctgag gctggaacaggccctgaagatgtggaataa

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