Oryzias melastigma (Indian medaka): 112155064
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Entry
112155064 CDS
T07439
Symbol
xrcc5
Name
(RefSeq) X-ray repair cross-complementing protein 5 isoform X1
KO
K10885
ATP-dependent DNA helicase 2 subunit 2
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
112155064 (xrcc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oml03400
]
112155064 (xrcc5)
DNA repair and recombination proteins [BR:
oml03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA-PK complex
112155064 (xrcc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ku
Ku_N
Ku_PK_bind
Ku_C
VWA_2
VWA
DUF6005
DUF4599
Motif
Other DBs
NCBI-GeneID:
112155064
NCBI-ProteinID:
XP_024142217
Ensembl:
ENSOMEG00000001816
UniProt:
A0A3B3CYD8
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Position
LG21:16792884..16801495
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AA seq
725 aa
AA seq
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MAGAKSALVLCMDVGFSMSNSSPGEESPFDLSKKVIQKFVQRQVFAETKDEVALVLFGTD
ATKNPLEEDEQYQNIVVHRHLMVPDFELLEEIEHQIHPEGQQADWLDALVVCMDLLQKET
QGKKCDRLNIVLLTDLCTPASPDKLEVIVENLKQAEITLQFFLPFPVEDDEEGEEDGEHG
DPGHPGAGKGLSREQQSGLEMVKHIMLSLDEEDGLNEVYTFRNAIEQLRMFKRIERRPMA
WPCQLTIGSSLSIRIVGYKAVTEERLKKMWITVDAQTNNKEDVKRETVYCLDDDNETEVQ
KEDIIQGFRYGSDIVPFSKVDQEQMKYKHDGKSFAVLGFTKQHLVFRHQFMGSQVVKIFP
PKDDEHAGVALSALIRGLDELKMVAIVRYAYDRRSNPQVGAAFPCIKQNYECLIYVQLPF
MEDLRPFAFPSLENNKKICPSETQLSAVDSLIDSMMLVEKDESGDLIDLLKPHHIPNPAF
QRHFQCLHHRAVNPGTPLPPLEPWLQAVLDRPEVIKERCQASLEEIKRKFPLTEVEKKKK
LKTSAQIFGKDSNEANADKGKEDEAEEEYNLADIAEGSVTSVGSVDPARDFHLLLKQKSL
PFGEVCQQLTHRIEQLLSNKNTQYYMKSITCIQAFREQSVKMANADLYNSYLQSLKRSIP
SRGLEVFWDLLVQDGVTLISNEEVSGSLISKNEANEFLKAEEIKEEAAAPPAEDTGDVDD
LLDMM
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atggcaggtgctaaatcagctttggttctgtgcatggacgtgggcttttccatgtccaac
tccagtccaggcgaggagtctccatttgatctctccaagaaagtcatccagaagtttgtg
cagcgtcaggtttttgcagagaccaaagatgaggtggctctagtcctgtttggcacagac
gccaccaaaaacccactggaagaagatgagcagtaccaaaacatcgtcgtgcatcgtcac
ctcatggttccagactttgagcttttggaagaaattgagcaccagatccacccagagggt
cagcaggcagactggctggatgcccttgtggtctgcatggatctgcttcagaaagaaact
cagggaaagaagtgtgatcgtctaaacatcgtcctcctgactgacctctgcaccccggcc
agcccagataaactggaggttattgtagaaaacctgaagcaagcggaaatcaccctgcag
ttctttttaccttttcctgtggaggacgatgaagagggtgaagaagatggggagcatgga
gaccccggtcaccctggtgcagggaaaggtctgtccagagaacagcagagtgggctggag
atggtgaaacacatcatgctgagtctggatgaggaagatgggctgaatgaagtttacact
ttcaggaatgctatagagcagctgcgtatgtttaagcgcattgagaggagaccgatggcc
tggccctgtcagctcaccattgggagctcgctgtccattcgtatcgttggctacaaggcg
gtgactgaggagagactgaagaagatgtggatcacagttgatgctcaaaccaacaacaag
gaggacgtgaagagagagactgtttactgtctggatgacgacaatgagacagaggtccag
aaagaagacatcattcaaggctttcgatatggaagcgacatcgttcccttctctaaagtt
gatcaggagcagatgaaatacaagcatgatgggaagagttttgctgttctgggcttcacc
aaacaacatctggtttttcgccatcagttcatgggatcgcaggttgtcaagatatttcct
cccaaagatgacgagcatgcaggagttgctctgtctgcgctcatccgtggactggatgaa
ctgaaaatggtcgcgattgtgcgttacgcttatgatcgacgcagcaaccctcaagtgggg
gcagctttcccctgcatcaagcagaattatgagtgtctgatttacgtccagctgcctttc
atggaggacctcaggccgtttgcttttccctctcttgaaaacaacaaaaagatttgtcct
tcagagactcagctgtcagctgtagactccctcattgactctatgatgctggtagaaaaa
gatgagagtggagatctgattgacctgctgaagccccaccacattcctaaccctgccttc
cagagacacttccagtgtctgcatcatcgagcagtgaaccccggcacccctctgcctcct
ttggagccgtggctgcaggctgtgctcgatcgtccggaggtcattaaggagcgctgccaa
gcttcattagaggagataaagaggaagtttcctctgactgaagtggaaaagaaaaagaag
ttgaagaccagcgctcagatttttggcaaagactctaatgaagcaaatgctgataagggg
aaggaagatgaagcagaggaggagtacaacctggcagacatcgctgaaggctcagtcact
tctgtgggcagtgtggatccagctagagacttccatctcctgttgaagcagaagagtctt
ccatttggagaagtttgccagcagctgacgcacaggatcgagcagttgcttagcaacaag
aacacacaatactacatgaagagcatcacctgtatccaggcttttagagagcaatctgtt
aagatggcaaacgctgatctgtacaatagctaccttcagtccctgaaaaggagcattccc
agcagaggcctggaggtcttctgggatctgcttgttcaagacggcgtgactttgatcagc
aatgaggaggtttcgggaagtttgatttcaaagaatgaggccaatgagtttctgaaagct
gaggagattaaagaggaggcagctgcacccccagcagaagacactggagatgttgatgac
ctgctggacatgatgtga
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