Oryzias melastigma (Indian medaka): 112155250
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Entry
112155250 CDS
T07439
Symbol
ift88
Name
(RefSeq) intraflagellar transport protein 88 homolog isoform X1
KO
K16474
intraflagellar transport protein 88
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
oml03037
]
112155250 (ift88)
Cilium and associated proteins [BR:
oml03037
]
Primary cilia and associated proteins
Intraflagellar transport (IFT) complex B1
112155250 (ift88)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_12
TPR_8
TPR_6
TPR_19
TPR_14
TPR_7
TPR_16
TPR_11
TPR_9
ANAPC3
ARM_TT21_5th
TPR_17
TPR_15
TPR_CcmH_CycH
ARM_TT21_N
Consortin_N
DUF2225
HAT_PRP39_C
ARM_TT21_C
TPR_MalT
Motif
Other DBs
NCBI-GeneID:
112155250
NCBI-ProteinID:
XP_024142537
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Position
LG21:complement(2017502..2038239)
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AA seq
856 aa
AA seq
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MENVHLSEEDEDLYSGYNNFNPAFYSEELENDEGFQQALRTSHGRRPLMTAQLPGTAIGG
RPLASSFGSRVPLASSAGRPVTGAVQDGAPRPMTSIRAAGYSSTMMRGSTFDALGQHRGP
APPLEEKNEDTPEEKIKILEKRVNDLIEESCMAHSNGASQLALEKAKEARRKEQALVRQR
EQSGTADHMNLDLTYSVLLNLANQYENNEMYPEALNTYQVIVKNKMFNNPGLLKVNMANI
YFKQKNYPKAIKFYRMAFDQIFNAPKEMRIKIMQNIGVVFVRMGQYSDAAMSFEHIMRES
PNIKTGFNLTLCNYATGDRERMKKAFQKLISVPLGIDDEDKYIPATDDTNTNMVIDAIKN
DKLYQMERDVKAQAEKYIMTAAKLIAPAIETSFASGFDWCVDMMKASQYIELANDLEINK
AITYLRQKDFNQAVETLKTFEKKDSRVKSAAATNLSFIYFLEKDYEQADRYADLAMNANR
YNPAALINKGNTVFIKQDYEKAAEFFKEALKNDSSCTEGLYNLGLTYKRLNRLQDALDCF
LKLNAILRNSAQVMHQIADLYDQMDDPHQAIEWLMQVISVTPTDPHVLAKLGKLHNNEGE
KSQALHYYSESFRYFPSNINVITWLGAYYIEAKFCENAIQYFERATLIQPTQVKWQLMVA
SCYRRIGNYQKALETYQNINRKFPDNVECLHFLVRLCTDMGLKEVQDYAIKLKKVEKAKE
IREQRVRSGRESSSRGRRGSREGSAGVSTPVLTSPMKSSITEDVKAVSQPESKLISPLLD
SGRDSSNSSRGERRSGKNISLPASNEPYESSSPKELDADYVDPLGPPTERPKTGAKRVVE
DNEFADEDLGDDLLPE
NT seq
2571 nt
NT seq
+upstream
nt +downstream
nt
atggaaaacgtgcatttatcagaggaggacgaagatctttattcgggttataacaacttt
aacccagcgttttactcagaggagctggagaatgatgaaggattccagcaggcgctcagg
accagccatggaagaagacctctgatgactgcacagttaccaggtactgccattggaggt
cgacctttagcttcatcttttggatctcgggtccctttggcctcgtcagcgggcagacct
gtgactggagctgtgcaggatggagctcctcgtccgatgacctccatcagagctgcaggt
tactcttccaccatgatgcggggttcaacatttgacgctctgggccagcacaggggtcct
gctcctcctcttgaagaaaagaacgaggacacgccagaagagaagatcaagatcctggag
aaaagagtcaacgatctgatcgaggagagttgtatggctcacagcaatggagcctcacag
ttggctctggagaaggccaaagaggcgaggagaaaggagcaggcgctcgtcaggcagagg
gagcagtctggtactgcggaccatatgaatttagacctcacctactctgttttgctcaac
cttgcaaaccaatatgaaaacaacgaaatgtacccagaagccctgaacacctatcaggtc
atcgtgaagaacaagatgttcaataatccaggccttctgaaagtcaacatggccaacatt
tacttcaagcagaagaactacccgaaagctatcaagttctaccgcatggcatttgatcag
atcttcaacgctcccaaagaaatgaggatcaagatcatgcagaacatcggggtggtgttt
gtgcgcatgggccagtattcggatgccgccatgtcctttgagcacatcatgagagagagt
cccaacatcaagacgggcttcaaccttacgctgtgcaactacgccactggagacagggag
aggatgaagaaggccttccagaagctcatctctgtccctctgggaatagacgacgaggac
aaatacattccagccactgatgacaccaacactaatatggtcattgatgccatcaagaat
gataagctttaccagatggaaagagacgtaaaagcccaggcggagaagtacatcatgaca
gcagcaaagctcatcgccccggcaattgagacctcttttgccagtggatttgactggtgt
gtggacatgatgaaggcttcccagtacatcgaactcgccaacgatctagagattaacaaa
gccatcacatacctcagacagaaggacttcaaccaggcagtggaaacactaaagactttt
gagaagaaggacagcagagtgaagagcgctgcagccacaaatctctccttcatctatttc
ctggagaaagattacgaacaggctgaccgatatgcagatctagctatgaacgctaaccgc
tacaaccctgctgctctcatcaacaaaggcaacacagtgtttatcaaacaggattatgaa
aaggctgcagagttcttcaaagaagccctgaagaatgattcctcctgcactgaaggcctc
tataacctgggtttgacctataagagactgaaccgcctgcaagacgccctggactgcttc
ctgaagcttaatgccattctgaggaacagcgcccaagtcatgcatcaaatagctgacctc
tatgaccagatggatgatcctcaccaggcgattgagtggctgatgcaggtcatcagtgtg
actcccactgatccacatgttcttgcaaaactgggaaagctgcacaacaatgagggagag
aagtcccaggctctacactattacagtgagtctttcaggtactttccctcaaacatcaac
gtgatcacatggttgggtgcttactacatcgaagcaaagttctgtgagaacgccattcag
tattttgaaagagcaactcttatacaacccacccaagtgaagtggcagctgatggtggca
agctgctacagaagaatcggaaactaccagaaagcccttgaaacctatcaaaacatcaac
cgcaagtttccagacaatgtcgaatgcctgcatttcctggtgaggttgtgcactgatatg
ggcctgaaggaggtccaagattatgcgatcaagctgaagaaggtggagaaggcgaaggaa
atcagagagcagagggtgaggtcggggcgggagagcagctccaggggtcgcagaggaagc
agagaaggcagcgctggcgtctccactcctgtcctcacctctcctatgaagtccagcatc
acggaggatgttaaagcagtgtctcagccagaatccaaactgatcagtccactgttggac
tctgggagagacagcagcaacagctccagaggagagcgccgcagcggcaaaaacatttca
cttcctgcttccaatgagccttatgagagcagcagcccgaaggaacttgatgcggattat
gtggaccctctgggacctccaacggagagaccaaaaacaggagcaaagagagtcgtggaa
gacaatgaatttgctgatgaagatcttggagacgaccttctaccagagtag
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integrated database retrieval system
