Oryzias melastigma (Indian medaka): 112155353
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Entry
112155353 CDS
T07439
Symbol
sox1a
Name
(RefSeq) transcription factor Sox-1a
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oml03000
]
112155353 (sox1a)
Transcription factors [BR:
oml03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
112155353 (sox1a)
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Gene cluster
GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
TM_HPP
Motif
Other DBs
NCBI-GeneID:
112155353
NCBI-ProteinID:
XP_024142677
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All DBs
Position
LG21:3429430..3551361
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AA seq
298 aa
AA seq
DB search
MYSMMMETDLHSPGHQTNTSTGQTGPNGGSKANQERVKRPMNAFMVWSRGQRRKMAQENP
KMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKTKTLLKKDK
YSLAGGLLSGPSGGAGVGLGVGMSSSGVGQRLESPGGHAGSAGSGYAHMNGWANGAYSGQ
VAAAAAAAAMMQEAQLAYSQHPGSGAHHHHHHSHHHHSHNPQPMHRYDMTALQYSPISNS
QSYMNASPSGYGGITYTQHQGSGVSSSSAMGTLGSLVKSEPSQSDHQSHFQWITEGRL
NT seq
897 nt
NT seq
+upstream
nt +downstream
nt
atgtatagcatgatgatggagactgacctccactcccccggacaccagacgaacacgtcc
acggggcaaacggggccgaatggcggctccaaagccaaccaggagcgcgtaaagagacca
atgaacgccttcatggtgtggtcccgggggcagcggaggaagatggctcaggagaacccc
aaaatgcacaactcggagatcagcaagcggctcggcgcggagtggaaggtgatgtccgag
gcggagaagcgtcctttcatcgacgaggcgaagcggttgcgcgccatgcacatgaaagag
cacccggattacaagtaccggcccaggcggaagaccaagacgttgctgaagaaggacaag
tactccctcgcgggggggctcctctctggacccagcggcggcgccggagttggtttgggc
gtcggcatgagttcctccggggtcggacagaggttggagagccccgggggccacgcgggc
tccgcgggctccggctacgcgcacatgaacggctgggcgaacggcgcgtactcggggcag
gtggctgcagccgcggcggccgctgccatgatgcaggaggcgcagctcgcctacagccag
cacccgggcagcggggcgcaccaccaccaccatcactcgcaccaccaccactcccacaac
ccgcagcccatgcaccgctacgacatgacggccctgcagtacagccccatctcgaactct
cagagctacatgaacgcctctccgtccggctacggcgggatcacctacacgcagcaccag
ggctccggcgtctcctcctcctccgccatgggcacgttagggtcgctggttaagtcggag
ccgagccaaagtgaccatcaaagtcatttccagtggatcaccgagggccgactgtga
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