Oryzias melastigma (Indian medaka): 112155411
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Entry
112155411 CDS
T07439
Symbol
prpf40a
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112155411 (prpf40a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oml03041
]
112155411 (prpf40a)
Spliceosome [BR:
oml03041
]
Complex A
U1 snRNP components
U1 related factors
112155411 (prpf40a)
Complex B
112155411 (prpf40a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
FF_PRPF40A
WW
WW_TCERG1
Motif
Other DBs
NCBI-GeneID:
112155411
NCBI-ProteinID:
XP_024142780
Ensembl:
ENSOMEG00000002118
LinkDB
All DBs
Position
LG21:complement(17157842..17173424)
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AA seq
892 aa
AA seq
DB search
MSSTEANNGPSQTPAYPAVPPSTIPPPYMGPPGIPPHFAPMGMPPMGQRPPSMTPMPPGI
MPPGIMPPMAAPPMGQMPGMLPPMMPGMMMAPRIPAATVQPTGPPGVDSTVAAPGTTTAT
NGSSQEEQPKKKSVWTEHKSLDGKTYYYNTETKQSTWEKPDDLKSPAEQLLSKCHWKEYK
SDTGKPYYYNSQTKESRWTKPKELEDLEAMIKAEENGTAEAAAVAPGTAATPTVQTDNTT
TLAAATEVETTAVATAAAAAAAVVSEELPSQVTVHPAAEVKTTDAPAVSTESSAVTESTA
SVKVTKEEPPELQKKTYKWNTKEEAKQAFKELLKEKGVSSNSSWEQAMKLIINDPRYSAL
PKLSEKKQAFNAYKVQTEKEEKEEARIKYKESKETFQRFLENHEKMTSTTRYKKAEQMFG
ELEVWSCVPERDRLEIYEDVLFFLAKKEKEQAKQLRKRNWEALKNILDNMANVTYRTTWS
EAQQYLLDNPTFAEDEELQNMDKEDALICFEEHIRALEKEEEEEKQKTLLRERRRQRKNR
ESFQKFLDELHDHGQLHSMSSWMEMYPALSSDMRFANMLGQPGSTPLDLFKFYVEDLKAR
YHDEKRIIKDILKDKGFMVEVNTSFDDFGSIISSDKRAATLDAGNIKLAFNSLLEKAEAR
EREREKEEARKMKRKEAAFKTMLKQATPPLEPEALWEGVRERFVKEAAFEDITLESERKR
IFKDFMHVLEHECQHHHSKTKKHSKKSKKHHRKRSRSRSGSESEEEEYHKKKKRSQSKSP
SERSTSGESAERSYKKSKKHKKKGKKRRHKSASPESDSEKKTREREGKREKDAEKEKEDK
SRGKSRPDSKQKSPKRKAAKEEQGGWDTSGSELSEGELEKRRRTLLEQLDAP
NT seq
2679 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcaacagaagctaacaacggcccgagccaaaccccggcttatccggccgtaccg
ccctcaacaatacctcctccatatatgggaccaccaggaatacctcctcattttgctcca
atgggaatgccccctatgggtcagcgaccccccagcatgactccaatgccacctggtata
atgccccctggcataatgccaccgatggcagccccaccaatgggacagatgccaggcatg
ttgccacctatgatgccaggaatgatgatggctcctcgcatcccagctgcgactgtacag
ccaacgggaccgcctggtgtcgattcaacagttgctgcaccgggaactactaccgccaca
aatggatcttcgcaggaagaacaaccaaaaaagaagtccgtttggacagaacataaatcg
ctggatgggaaaacatattattacaacacagaaaccaaacagtccacatgggagaaacct
gatgaccttaaatctcctgcagagcaactgttgtctaaatgccactggaaggagtacaag
tcagacacggggaagccttattactacaactctcaaacgaaggaatccagatggaccaaa
cccaaagagctggaggatctggaagctatgatcaaagcagaggagaacggaacggcagag
gcggcagccgtggcgccgggaactgctgctactcctacagtgcaaacagacaacacgact
acgttggccgccgcaacagaggtggagacaaccgctgtagcaacggcggcggcggcggct
gctgcagtcgtctcagaggagctcccgtcccaggtgaccgtgcatccagcagctgaggtt
aagaccacagatgcacctgcggtttccaccgagagttcagctgtgacagagagtacagcc
agtgttaaggttactaaagaagagccgccggaactccagaagaaaacgtacaaatggaac
accaaggaggaggccaagcaggctttcaaagagctgctgaaggaaaagggtgtttcatca
aactcctcttgggagcaggccatgaaactgattatcaacgatcctcgctacagcgcgctt
cccaagctgagtgaaaagaagcaggccttcaacgcctacaaagttcaaactgaaaaggaa
gaaaaggaggaggctcggattaaatacaaggagtccaaagagacctttcagagattcctg
gaaaaccatgaaaagatgacgtccaccaccagatacaagaaagcggagcagatgtttgga
gagctggaagtgtggagctgcgttcctgagagagacagactggagatctatgaagatgtg
ctcttcttcctcgctaaaaaggagaaagaacaagccaagcagctaaggaagaggaactgg
gaagctctgaagaacattctggacaacatggccaacgtcacgtaccgcaccacgtggtcc
gaggcgcagcagtatctgctcgacaatcctacgtttgcagaggacgaagagctgcagaat
atggacaaagaggacgccctcatttgcttcgaggagcacatccgggccctggagaaggag
gaagaggaggagaagcaaaagactcttctcagagaaagaagacggcagcgaaagaacagg
gagtcctttcagaaatttctggacgagctccatgaccacggtcagctgcactccatgtcc
tcctggatggagatgtaccccgccctcagctccgacatgcgcttcgccaacatgctggga
cagcctggttccactcccttggatcttttcaaattctacgtagaagacctaaaagctcgt
taccatgacgaaaagcgaataattaaagatatcctcaaggacaaaggcttcatggtggaa
gtgaacaccagctttgatgatttcggatcaatcatcagctccgataagagagccgccaca
ctggacgcaggaaacataaagctggccttcaacagtctgctggagaaggctgaagcccga
gagcgggagcgggagaaggaggaggcccgcaagatgaaaagaaaagaagcggctttcaaa
accatgctgaagcaagccactccacccctggaaccagaggcattgtgggagggagtcagg
gagcggtttgtgaaagaggcggccttcgaggacatcactctggagtcggagcggaaaaga
atctttaaagatttcatgcacgttttggagcatgaatgtcagcatcaccactccaagacg
aagaagcactcgaagaagtccaagaagcaccacaggaagagatcccgctcccgatcgggc
tccgagtctgaggaagaggagtaccacaagaagaagaagaggtctcaatccaaatctcca
tcagagcgatcaaccagcggagagtctgcagagaggagctacaagaaatccaagaagcac
aagaagaagggcaagaagaggcgtcacaagtctgcctccccggaatctgacagcgagaag
aagaccagagaacgcgaaggaaagcgggaaaaggacgcagagaaggagaaagaggacaaa
tccagagggaaatcccgtccagactccaaacagaaatctcctaaaaggaaagcggctaag
gaagagcagggcggctgggatacatctggcagtgagctgagtgaaggagagctggagaaa
aggagaagaaccttactggagcagctggatgctccttaa
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