Oryzias melastigma (Indian medaka): 112155587
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Entry
112155587 CDS
T07439
Symbol
lsm8
Name
(RefSeq) LSM8 homolog, U6 small nuclear RNA associated
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03018
RNA degradation
oml03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112155587 (lsm8)
09123 Folding, sorting and degradation
03018 RNA degradation
112155587 (lsm8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oml03019
]
112155587 (lsm8)
03041 Spliceosome [BR:
oml03041
]
112155587 (lsm8)
Messenger RNA biogenesis [BR:
oml03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112155587 (lsm8)
mRNA degradation factors
5'-3' decay
Lsm complex
112155587 (lsm8)
Spliceosome [BR:
oml03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
112155587 (lsm8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Motif
Other DBs
NCBI-GeneID:
112155587
NCBI-ProteinID:
XP_024143081
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All DBs
Position
LG23:complement(22273112..22275977)
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AA seq
96 aa
AA seq
DB search
MSTALESYINRSVAIVTSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLY
IVRGDNVAVIGEIDEETDSTLDLGNIRAEPLNSVVH
NT seq
291 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccgcactggagagctacatcaaccgttcggtggccatcgtcacttcagacggc
aggatgatcgtgggaactctgaaaggcttcgaccagaccatcaacctcatcctggacgag
agccacgagcgcgtcttcagctccagtcagggcgtggagcaggtggtgctgggactctac
atcgtcagaggagacaacgtcgccgtgatcggtgagatcgacgaagagaccgactccacg
ctggatttaggaaacatccgagccgagccgctcaactccgtcgttcactga
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