KEGG   Oryzias melastigma (Indian medaka): 112155851
Entry
112155851         CDS       T07439                                 
Symbol
per1b
Name
(RefSeq) period circadian protein homolog 1b
  KO
K21944  period circadian protein 1
Organism
oml  Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:oml00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:oml03400]
    112155851 (per1b)
DNA repair and recombination proteins [BR:oml03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    112155851 (per1b)
SSDB
Motif
Pfam: Period_C Per3-like_PAS-A bHLH_PER PAS_3 PAS_11 PAS
Other DBs
NCBI-GeneID: 112155851
NCBI-ProteinID: XP_024143587
Ensembl: ENSOMEG00000012728
LinkDB
Position
LG18:complement(14610051..14626610)
AA seq 1398 aa
MSYDGCTSTPSSSTQGRVSGAHREDQDPQGLSGQNADQPGPHASPQEPSSGDDGGGQRGP
SSDEMEGMSSGNDSGERESHPRSCGHQSSRSSHSSSNGKDSGMMLETTESNKSSNSQSLS
PPGGSLAYSLLSTSSEHDPPSTSGCSSDQSARLQTQKELMKAIKELKLRLPAERKAKGHS
STLSALKYALQCVRQVRANKEYYHQWSVEECHGCSLDLSAFTVEELDNITSEYTLKNTDT
FSMAVSFLSGKVVYVSPQGSSLLRCKPECLQGTIFSELLAPQDVSTFYSSTAPCRLPPWA
SCIGSASPPADCTQEKSMFCRISADRVQGGELRYYTFRLTPYQLTLRDSDAAEPQPCCLL
IAERVHSGYEAPRIPPDKRIFTTSHTPSCLFQEVDERAVPLLGYLPQDLVGTPILLYIHP
EDRPTMVAIHEKIFQFAGQPFDYSPLRMCARNGEYLTIDTSWSSFVNPWSRKVAFVIGRH
KVRTSPLNEDVFAPQPGYETQVTTPDIVQLSEQIHRVLVQPVHSSSSQGYSSLGSSGSRG
SRRSQQHHHSASATSSSDSNGPAMEEAAVASYKPMTFQQICKDVHMVKTNGQQVFIESRN
RPPPRKHAGTGATRAVNSDPIRELIADVTQPRKALVPAQLVQKEATTGYSYQQINCLDSI
VRYLESCNIPNTVKRKCGSSSCTASSTSDDDKQPDAGCSNKGGSVNLVGEPPPLPPLTMA
AKAESVASVTSQCSFSSTIVHVGDKKPPESDIVMEDAPIVLAPPPPPPPPPRILTPSTVT
TSTFTSVPPASTAVTPSVPTSQTVQPERESWRGGGGGGGGGSRFGLTKEVLSAHTQQEEQ
AFLDRFKDLSKLRVFDQTASLAARCHVPAALPRGVRCSRDYPAAGGSSAHRRGRGGKRLK
HQESSEPHASPGARGNRQDSRVGAAPMPISMGVGAAANSSSWPSAGSQASMPPAPFAPGM
FPIYPIYPPMAQPLTDLSRFPPTPTVPPMMALVMPNYMFPQMGGPMPQPGLPPGQFYNPN
YTFISPPPAPAPTVFNPMPMQGNYPPSHSSTAESCTPADRDGADSPLFHSRCSSPLNLLQ
LEESPSNRLEVATALAASQQATPSAQGSVPAGGQSSANQRSSDDTSKENGEANESNQDAM
STSSDLLDLLLQEDSRSGTGSAASGSGSSGTRSSGSGSGSNGCSSSGTSGTSSSQGSHTS
KYFGSIDSSENDHSRKQPAGGGGGGAGSSSAGGDGGEEQFIKCVLQDPIWLLMANTDEKV
MMTYQLPVRDMETVLREDREALRNLQKHQPRFTDEQKKELSQVHPWIRTGRLPRAINISG
CAGCKCPPAVPTDAPFDVEIHEMELCTVLKAQEESFKKNADEEDEEEEEEKEAKAQDSNQ
AAAAEEQSLRSETLAGET
NT seq 4197 nt   +upstreamnt  +downstreamnt
atgagttatgatggctgcacgtcaacgcccagcagcagcactcaggggagagtgtcgggg
gcccaccgcgaagaccaggacccacagggcctgagcgggcagaacgccgaccagccgggg
ccccacgcctcgccacaggagccgagcagcggagacgatggcgggggtcaaaggggacct
agttcggacgagatggagggcatgtccagcgggaacgactccggcgagcgggagagtcac
ccgcgatcctgcggacaccagtcctcacggagctcccacagctcctccaacgggaaggac
tccgggatgatgctggagaccacggagagcaacaagagctccaactcccaaagcctgtcc
ccccctgggggctctctggcctacagcctgctgtccaccagctccgagcacgaccccccc
tccacgtctggctgcagcagcgaccagtcggcgaggctgcagacgcagaaggagctgatg
aaggccatcaaggagctgaagctccgcctgccggccgagcgcaaagccaaaggccactcc
agcactctgagcgcgctcaaatacgctctccagtgcgtccgacaagtccgagccaacaag
gagtactaccaccagtggagtgtggaggagtgtcatggctgcagcctggacttgtctgcc
ttcacggttgaagagctggacaacatcacgtcagagtacaccctaaaaaacacggacacc
ttctccatggccgtgtccttcctgtcagggaaagtcgtctacgtgtcgccgcagggctcg
tccctgctgcgctgcaagcccgagtgtctccaggggaccattttttcagagctcctggca
ccccaagacgtcagcaccttctacagcagcacggcgccctgccgcctgcccccctgggca
tcttgcatcggctcagcctcccctcccgccgactgcacccaggagaagtccatgttctgt
cgcatcagcgccgaccgcgtgcagggcggcgagttgcgctactacacgttccgcctgacg
ccgtaccagctcaccctccgagactcggacgccgcagagccgcagccctgctgcctgctc
atcgcggagagagtccactcgggatatgaagccccccggatccccccggacaagaggatc
ttcaccaccagccacactcccagctgcctcttccaggaagttgatgagagagccgtgcca
ctgttaggttacctgccccaggacctggtggggacccccatactgctctacatccaccca
gaggaccggcccacaatggtcgccatccacgaaaagatctttcagttcgcagggcagccc
ttcgactattcacctttgcggatgtgcgcccgcaacggggagtatctgaccatcgacacc
agctggtcttcattcgtcaacccctggagcaggaaggtggcgtttgtcatcggacgccac
aaagtcagaacgagtcctctgaatgaagacgtgttcgcgccgcagccaggctacgagact
caggtcaccacgccggacatcgtccagctcagcgagcagatccaccgcgtcctggtgcag
ccggtgcacagcagcagctcccaaggctacagctcgctgggctccagcggctcgcgcggt
tcccgccgctcccaacagcaccaccacagtgcctccgcaacgtcgtccagcgacagcaac
ggccccgctatggaggaagccgcagtcgcctcgtacaaacccatgaccttccagcagatc
tgcaaggacgtccacatggtcaagaccaacgggcagcaagtcttcatcgagtcccgtaac
cggcctccaccccgaaaacacgctggcacaggcgcaacaagagctgtcaacagcgacccg
atcagagagctgatcgcagacgtgacgcaaccacgcaaagctttggtccccgcacagctg
gtgcagaaggaggccaccacggggtactcctaccagcagatcaactgcctggacagcata
gtcaggtacctggagagctgtaacattcccaacaccgtcaaaaggaagtgcggctcctcc
tcctgcaccgcctcctccacgtccgacgacgacaaacagccggacgccggctgcagcaac
aaaggtggttcagtaaaccttgtaggtgaaccacctcctctgcctcctctgaccatggcg
gccaaggcagagagtgtagcctcagttacgtctcagtgtagcttcagcagcaccatcgtc
catgtaggagacaagaaacctcccgagtcagatatagtcatggaggatgctcctatagtt
ctggctcctcctcctcctcctcctccccctcctcgtatactgactccttccaccgtcacc
acctccaccttcacatccgtgccccccgccagcaccgccgtgaccccgtctgtcccgacc
tcacagactgtacagccagaaagggagagctggagaggcggcggcggcggtgggggaggc
ggcagccgctttgggctgaccaaagaggtgctgtcggctcacacccagcaggaggagcag
gcgttcctcgaccgctttaaggacctgagtaagctgcgggtgtttgatcagacggcgtct
ttggcggcgcgctgccatgtccccgccgctctgccgagaggcgtgcgctgctctcgggat
taccccgccgcaggaggcagtagcgcccaccgacgggggcggggtggaaagcggctaaag
caccaggagtcgtcagagccgcacgcctccccgggcgccaggggaaaccgccaggacagc
cgagtcggcgccgcccccatgccaatctccatgggggtgggggccgctgcaaactcctcc
tcctggccctccgccggctcccaggccagcatgccccccgcccccttcgccccgggaatg
ttccctatctaccccatctacccgccgatggcgcagcccctcacggatctgtctcgcttt
ccccccaccccgacggtccccccgatgatggctctcgtcatgcccaattacatgttcccc
cagatggggggtccgatgcctcagcccggtctgcccccaggacagttctacaaccccaac
tacacgtttatcagcccccctcctgcccccgcccccaccgttttcaaccccatgcccatg
cagggcaactaccccccctcccacagcagcacggctgagtcctgcacgcccgccgaccgg
gacggcgcagactcccccctcttccattcccgctgctcctcccccctcaacctcctacag
ctggaggagtcgccaagcaaccggctcgaggtcgccacggcgctggccgcctcccagcaa
gccacgccctccgcgcagggcagcgtgccagccgggggccagagctcggccaatcagaga
agctccgacgacacttccaaggagaacggtgaggccaacgagtccaaccaggacgccatg
tccacctccagcgacctcctggacctgctgctgcaggaagactcccggtccggcaccggc
tctgccgcctccggatccggctcctccggcaccagatcttcaggttctggttccggctcc
aacggctgcagctcgtctggaaccagcggcaccagcagcagccagggaagccacaccagc
aagtacttcggcagcatcgactcctcggagaacgaccactcccgcaagcagccagcaggg
ggcggcggcggcggtgccggcagcagcagcgccggaggagacggcggggaagagcagttc
atcaagtgtgtgctgcaggatcccatctggctgctgatggccaacaccgacgaaaaggtc
atgatgacgtaccagctgcccgtcagggacatggagacggtgctgcgggaggaccgtgaa
gccttgaggaacctgcagaaacatcagcctcgcttcacagacgagcagaagaaagagctg
agtcaggtccacccctggatccggacaggccgcctcccccgagccatcaacatatcgggc
tgcgccggctgcaagtgtccgccggcggtgccgaccgacgcccccttcgacgtggagatc
cacgagatggagctgtgcaccgtgctgaaggctcaggaggagagcttcaagaagaacgct
gacgaggaggacgaggaggaagaggaggagaaggaggccaaagcgcaggacagtaatcaa
gctgcagccgcagaggagcagagtttgagatccgaaacgttggcgggagagacttaa

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