Oryzias melastigma (Indian medaka): 112155948
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Entry
112155948 CDS
T07439
Symbol
col4a5
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml04382
Cornified envelope formation
oml04510
Focal adhesion
oml04512
ECM-receptor interaction
oml04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
112155948 (col4a5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
112155948 (col4a5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
112155948 (col4a5)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
112155948 (col4a5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
oml04147
]
112155948 (col4a5)
00536 Glycosaminoglycan binding proteins [BR:
oml00536
]
112155948 (col4a5)
Exosome [BR:
oml04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
112155948 (col4a5)
Glycosaminoglycan binding proteins [BR:
oml00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
112155948 (col4a5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
112155948
NCBI-ProteinID:
XP_024143783
LinkDB
All DBs
Position
LG18:19761963..19811559
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AA seq
1684 aa
AA seq
DB search
MSADSRRLRAALLCLALCAVGTDSKACSGCSTARCDCSGVKGDKGERGLPGLTGQPGVPG
FPGPEGPIGSRGEKGGDGLPGLPGLKGIRGPPGLPGFPGTPGVAGIPGHDGPPGPRGIPG
CNGTKGDRGFPGSPGIPGYEGQPGPPGPSGQKGEPGELIPDNIYGNKGTVGYPGPPGQPG
ATGPPGFQGPSGPQGPRGYPGQPGAPGPPGPKGNMALKFEGAKGQKGEQGVPGPPGPPGK
QEEQSRSPEDVIQRGDKGDPGYPGPRGDPGSPGPPGPSGGRKGEKGEPGEPGKRGKPGKD
GDPGPSGIPGFKGEPGLPGLPGRDGGAGQKGERGYPGPPGEVIGGIDQGRVGPKGEPGIP
GSPGPKGDRGPQGFSGPPGEPGRPATGGSGLPGAPGYPGEKGQKGRPGDPGISLPGPPGR
QGGPGPPGPQGPPGPQGFSSSTDNCPPGAPGIPGPLGDRGFPGEQGQKGEKGDTCVNCFG
VTNGVPGPQGPPGQPGFPGTPGPAGVKGDRGFPGPTGPTGPPGNPGPQGPAGFRGEKGDP
GEAVSVSGLKGEKGDTGFPGLPGPSGLDGRPGRDGPPGPPGPKGLPGSSRTKGEPGPPGE
PGVPGIPGDRGPPGSPGYGPPGPQGDKGVQGVSGRPGPSGNPGPKGEPGLAVAEKGLPGP
RGQDGEPGRPGPPGTPGQPGQPGFPGSPGGKGDPGVPGSGLPGPPGPKGFPGIPGQPGAP
AEPGRPGVDGFPGQPGLPGPKGEPGFGLPGPPGQPGLQGPKGFAGPKGDPGFPGSPGQPG
RSGFDGVPGLKGEPGTPGIPGPRGPPGTPSSGAPGPMGPPGFPGPTGSPGFPGAKGAKGD
PGIPGRDMPGQPGERGNPGFPGSPGPVGTPGPPGGPGRDGIPGAPGQKGDIGPMGPPGPS
GGPGGPGIPGGPGFKGDPGFPGRDGPPGPGGPKGDRGDPGLPGPPGFSRPQENIKGIKGD
PGPPGPAGFPGQKGIAGLPGDPGLPGTDGRPGTPGPQGPKGDSGIPGSPGGPGFPGPKGN
MGDMGIPGPSGLKGLPGISGRPGSPGQPGAPGFPGSKGEPGSAGVGPPGLSGQKGEPGQP
GFPGSPGLKGSPGLPGLSGGPGGPGAKGEPGLPGFIGSPGPTGPKGLDGEPGIPGLPGGP
GRPGEPGLPGQPGIRGDKGQAGRDGIPGPPGVKGDPGIPGFGGPGPSGIPGIPGTKGDPG
LPGPAGTPGFPGPKGDRGFDGSPGVPGNPGNPGSPGRSIPGPKGLQGPPGPPGREGLPGP
AGLPGPEGPRGPPGGGGVKGEKGFPGSPGQPGFPGQKGDPGTPGIPGPPGNSGLPGLKGD
SGVPGVPGFPGPKGDPGPQGPSGFPGDPGSLGPPGLPGEPAVLPPPGYVKGVRGPPGPPG
GPGPKGLPGNPGQNGEPGPPGAPGDPGLDGPPGFNGPPGLKGDLGPPGQPGQQGRPGPQG
PDGPQGPVGPSGSASAHGFLITRHSQTQEVPYCPDGTSLIYDGYSLLYVQGNERAHGQDL
GTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPNEMPMSPITGETIKPHISRCS
VCEAPAMVIAIHSQTIQIPECPQTWQTLWIGYSFMMHTSAGAEGSGQALASPGSCLESFR
SSPFIECHGRGTCNYYGNSYSFWLATVDFSEMFRKPEPETLKAGNLRSRISRCAVCMKRT
LTNF
NT seq
5055 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcggactcgcggcggctccgcgcggcgctgctctgcctcgcgctgtgcgctgtt
ggaaccgactccaaggcctgcagcgggtgttccacggccagatgtgactgcagtggagtc
aaaggagacaagggggagaggggcctgccgggcctcaccggacagcccggggtgccaggg
ttccccggacccgaaggaccgattggatccagaggagagaaggggggtgatggtcttcca
ggacttccaggtctaaaaggcatccgcggacctccaggattaccaggatttccaggaact
cctggagttgcaggaatcccaggacacgatggtcctcccggccccagaggtatcccagga
tgcaatgggacaaagggtgaccgaggtttcccaggaagtccaggaattccaggatatgaa
ggacagccgggtcctccaggaccatctggacagaagggtgaacccggagaactgattcct
gacaatatttatggaaataaaggaacagtgggatatccgggaccaccgggacagccggga
gctacagggcctcccggcttccagggtccaagtggcccccaaggaccgagaggttatccg
ggtcagcccggtgcacctggtcctcctggcccaaagggtaacatggctctgaagtttgaa
ggagccaaaggacagaagggggagcagggtgtgccgggaccgccgggtcctcctggaaag
caggaggagcagagtcgatcaccagaagatgtgattcagagaggagataagggtgacccc
ggatatcctgggcctcgaggggacccgggctccccaggaccccctggcccatccggtgga
aggaaaggagagaaaggagagcccggagagccaggcaaacgaggaaaaccaggaaaagac
ggcgatccaggtccttcaggaatcccaggattcaagggggaaccgggcctgccgggtctc
ccgggccgggatgggggagctggacagaagggggaacgtggatacccaggtcctccagga
gaggttatcggtggcattgatcaaggtcgggttggcccaaagggtgaaccgggtataccg
ggatcaccgggacccaaaggtgacagaggaccacaaggtttctccggacctccaggagaa
ccgggtcgcccggctacaggaggcagtggtttgcccggagctccaggctatccaggagag
aagggccaaaaaggacgacctggagatccagggatctcgctgcccggcccgccagggcgt
caaggaggtcctgggcctcccggtccacaggggcctcctgggcctcaaggtttttcctcc
tccacagacaactgccctccgggagcgcctggaattcctggacccttgggagataggggt
ttcccaggagaacagggtcagaaaggtgagaagggggacacctgtgtgaactgcttcgga
gtcaccaacggcgtccctggaccccagggacctcctgggcagcctggatttcctggaacg
cctggccccgcaggagtcaagggggacagaggattcccaggaccaactggtccaaccgga
cctcctggtaatcctggtcctcaagggcctgcagggttccgtggggagaaaggagatcca
ggagaagctgtcagcgtttcaggtctgaagggggagaaaggtgacactggctttcctgga
ttgcccggtccatctggtttggatggtcgaccgggtcgggatggaccacccggacctcct
gggcccaaaggactccctggttcttcacggacgaaaggagagccagggccacccggtgaa
ccaggtgtacctggcatccctggagacagaggtcctcctggttcacctggttatggacct
ccaggaccacaaggagacaaaggtgtccagggtgtgtctggaagaccgggaccttctgga
aatccaggtcctaaaggtgaaccgggtctagcagtggcagagaaaggtttaccaggaccc
agaggacaggatggtgagccaggacgtccaggtccaccaggaaccccaggtcagcctgga
cagcctggcttccctggttcaccaggagggaagggtgatccaggagtcccaggaagcgga
ctgcctggccctcctggacctaaaggattcccaggtattccaggtcagccaggtgcacct
gctgaaccaggtagaccaggagtggatggattccctggccagccagggctccctggaccc
aagggagagcctggatttggacttcctgggcccccaggtcagccaggactacaaggacca
aagggttttgctggaccaaagggagatccaggttttcctggaagtcctggtcagccagga
cgttctggattcgacggagttccaggtctcaaaggtgagcctggaacacctggtattccc
ggacctcgaggaccacctggaaccccgtcttctggagcccctgggcccatgggtcctcct
ggatttcctggtccaacaggatcacctgggttccctggagcgaagggagctaaaggagac
cccggtattccaggtagagacatgccaggtcaaccaggagaaagaggaaatcctggtttc
ccaggttccccaggaccagtgggaactccgggaccacctggaggtcctggacgtgatggc
attcccggagctccaggtcagaagggtgacataggtcccatgggccctcctggaccttct
ggaggaccagggggtccaggaatccccggtggtccaggatttaaaggtgatccaggcttt
ccaggaagagatggcccaccaggccctggtggtccaaaaggagacaggggagatcctggt
ctgccaggccctccaggattctccaggccacaagaaaacattaaaggaattaaaggagat
cctggaccaccaggccctgcaggttttccagggcagaagggcatcgctggacttcccggt
gaccctggtcttcctggaacagatggacggcctggaactccaggaccacaagggcctaag
ggagattctggtatccctggaagtccgggtggtcctggattcccaggtccaaagggcaac
atgggggatatgggaattccaggaccttcaggtctgaagggtctcccaggtatttcagga
aggccaggatccccaggtcaacccggagcacctggtttcccaggaagtaaaggtgaacct
ggctctgctggtgttggacctccaggactgtcggggcagaagggtgagccaggccagccg
ggattcccgggaagtccaggattgaaaggaagtccaggattacctggactttcgggtgga
ccgggaggaccaggtgctaagggggagcctggcctgccaggatttataggatctccaggt
cccacgggccctaagggtctagatggagagcctggtattccaggtctcccaggtggtcca
ggtagaccaggagagccaggtttgcctggacaaccaggaatccgtggagacaaaggtcaa
gcaggtcgggacggaattccaggaccaccaggagtcaaaggagatccaggaattcctggt
tttggtggtcctggtccttcagggattcctggtatcccgggcacaaagggagacccaggt
cttcccggtccagctggtactccaggttttcctggtccaaaaggagaccgaggctttgac
ggatccccgggtgttcctggtaacccaggtaaccctgggtcccctggacgttccattccg
ggccctaaaggtctccaaggaccaccagggccgcccggaagagaaggcctcccaggtcct
gcaggtctccctggacctgaaggtccccgtgggcccccaggaggtggtggcgtcaaaggg
gaaaagggctttcctggttctcccggccaaccaggcttccccggacagaagggggatcct
ggaactccaggaattcctggcccccctggaaatagtggtcttccgggtttgaaaggagac
tctggagtgcctggtgttcctgggtttcctggaccaaagggggacccgggtccacagggt
cccagtggttttcctggagatcctgggagtctgggaccacccggtctccctggtgagccg
gctgtactacccccacctggctatgtgaagggagtgcgagggccccccggtccccccggc
ggtcctggtcctaaagggctgcccgggaatccaggtcaaaatggagagccaggtccccca
ggtgctcctggagatcccggtctggacggtcctcctggtttcaacggcccacctggtctg
aagggagacctcggacctcccgggcagcctggccagcagggcagacctggtcctcaaggt
ccagatggcccacagggtcctgttggtccatcaggatccgcgtcggcccatggcttcctc
atcacccgacacagccagactcaagaggttccgtactgccccgacggcaccagcctgatc
tacgacggctactcactgctgtacgttcagggcaacgagcgtgctcatgggcaggatctc
ggcacggccggcagctgcttgcgcaggttcagcaccatgcccttcatgttctgcaacatc
aacaacgtttgcaactttgcttctcgcaatgactactcctactggctgtctacccccaac
gaaatgcccatgtcccccatcacaggagagaccatcaagcctcacattagcagatgttcg
gtgtgtgaagctcccgccatggtgatcgccatccacagccagaccatccagatccctgag
tgtccccagacctggcagacactgtggatcggatattctttcatgatgcacaccagtgca
ggtgcagagggctccggtcaggctctggcctcccccggctcctgcctggagagtttccgg
agctcccccttcatagagtgccacggaagaggaacgtgcaactactacggaaactcctac
agcttctggctggccaccgtggacttttcagagatgttcagaaagcccgagccggagacg
ctgaaggcggggaacctgcgctcgcgcatcagccggtgtgcggtctgcatgaaaaggacg
ctgaccaatttttaa
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