KEGG   Oryzias melastigma (Indian medaka): 112155948
Entry
112155948         CDS       T07439                                 
Symbol
col4a5
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
  KO
K06237  collagen type IV alpha
Organism
oml  Oryzias melastigma (Indian medaka)
Pathway
oml04382  Cornified envelope formation
oml04510  Focal adhesion
oml04512  ECM-receptor interaction
oml04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:oml00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    112155948 (col4a5)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    112155948 (col4a5)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    112155948 (col4a5)
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    112155948 (col4a5)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:oml04147]
    112155948 (col4a5)
   00536 Glycosaminoglycan binding proteins [BR:oml00536]
    112155948 (col4a5)
Exosome [BR:oml04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   112155948 (col4a5)
Glycosaminoglycan binding proteins [BR:oml00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   112155948 (col4a5)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 112155948
NCBI-ProteinID: XP_024143783
LinkDB
Position
LG18:19761963..19811559
AA seq 1684 aa
MSADSRRLRAALLCLALCAVGTDSKACSGCSTARCDCSGVKGDKGERGLPGLTGQPGVPG
FPGPEGPIGSRGEKGGDGLPGLPGLKGIRGPPGLPGFPGTPGVAGIPGHDGPPGPRGIPG
CNGTKGDRGFPGSPGIPGYEGQPGPPGPSGQKGEPGELIPDNIYGNKGTVGYPGPPGQPG
ATGPPGFQGPSGPQGPRGYPGQPGAPGPPGPKGNMALKFEGAKGQKGEQGVPGPPGPPGK
QEEQSRSPEDVIQRGDKGDPGYPGPRGDPGSPGPPGPSGGRKGEKGEPGEPGKRGKPGKD
GDPGPSGIPGFKGEPGLPGLPGRDGGAGQKGERGYPGPPGEVIGGIDQGRVGPKGEPGIP
GSPGPKGDRGPQGFSGPPGEPGRPATGGSGLPGAPGYPGEKGQKGRPGDPGISLPGPPGR
QGGPGPPGPQGPPGPQGFSSSTDNCPPGAPGIPGPLGDRGFPGEQGQKGEKGDTCVNCFG
VTNGVPGPQGPPGQPGFPGTPGPAGVKGDRGFPGPTGPTGPPGNPGPQGPAGFRGEKGDP
GEAVSVSGLKGEKGDTGFPGLPGPSGLDGRPGRDGPPGPPGPKGLPGSSRTKGEPGPPGE
PGVPGIPGDRGPPGSPGYGPPGPQGDKGVQGVSGRPGPSGNPGPKGEPGLAVAEKGLPGP
RGQDGEPGRPGPPGTPGQPGQPGFPGSPGGKGDPGVPGSGLPGPPGPKGFPGIPGQPGAP
AEPGRPGVDGFPGQPGLPGPKGEPGFGLPGPPGQPGLQGPKGFAGPKGDPGFPGSPGQPG
RSGFDGVPGLKGEPGTPGIPGPRGPPGTPSSGAPGPMGPPGFPGPTGSPGFPGAKGAKGD
PGIPGRDMPGQPGERGNPGFPGSPGPVGTPGPPGGPGRDGIPGAPGQKGDIGPMGPPGPS
GGPGGPGIPGGPGFKGDPGFPGRDGPPGPGGPKGDRGDPGLPGPPGFSRPQENIKGIKGD
PGPPGPAGFPGQKGIAGLPGDPGLPGTDGRPGTPGPQGPKGDSGIPGSPGGPGFPGPKGN
MGDMGIPGPSGLKGLPGISGRPGSPGQPGAPGFPGSKGEPGSAGVGPPGLSGQKGEPGQP
GFPGSPGLKGSPGLPGLSGGPGGPGAKGEPGLPGFIGSPGPTGPKGLDGEPGIPGLPGGP
GRPGEPGLPGQPGIRGDKGQAGRDGIPGPPGVKGDPGIPGFGGPGPSGIPGIPGTKGDPG
LPGPAGTPGFPGPKGDRGFDGSPGVPGNPGNPGSPGRSIPGPKGLQGPPGPPGREGLPGP
AGLPGPEGPRGPPGGGGVKGEKGFPGSPGQPGFPGQKGDPGTPGIPGPPGNSGLPGLKGD
SGVPGVPGFPGPKGDPGPQGPSGFPGDPGSLGPPGLPGEPAVLPPPGYVKGVRGPPGPPG
GPGPKGLPGNPGQNGEPGPPGAPGDPGLDGPPGFNGPPGLKGDLGPPGQPGQQGRPGPQG
PDGPQGPVGPSGSASAHGFLITRHSQTQEVPYCPDGTSLIYDGYSLLYVQGNERAHGQDL
GTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPNEMPMSPITGETIKPHISRCS
VCEAPAMVIAIHSQTIQIPECPQTWQTLWIGYSFMMHTSAGAEGSGQALASPGSCLESFR
SSPFIECHGRGTCNYYGNSYSFWLATVDFSEMFRKPEPETLKAGNLRSRISRCAVCMKRT
LTNF
NT seq 5055 nt   +upstreamnt  +downstreamnt
atgagcgcggactcgcggcggctccgcgcggcgctgctctgcctcgcgctgtgcgctgtt
ggaaccgactccaaggcctgcagcgggtgttccacggccagatgtgactgcagtggagtc
aaaggagacaagggggagaggggcctgccgggcctcaccggacagcccggggtgccaggg
ttccccggacccgaaggaccgattggatccagaggagagaaggggggtgatggtcttcca
ggacttccaggtctaaaaggcatccgcggacctccaggattaccaggatttccaggaact
cctggagttgcaggaatcccaggacacgatggtcctcccggccccagaggtatcccagga
tgcaatgggacaaagggtgaccgaggtttcccaggaagtccaggaattccaggatatgaa
ggacagccgggtcctccaggaccatctggacagaagggtgaacccggagaactgattcct
gacaatatttatggaaataaaggaacagtgggatatccgggaccaccgggacagccggga
gctacagggcctcccggcttccagggtccaagtggcccccaaggaccgagaggttatccg
ggtcagcccggtgcacctggtcctcctggcccaaagggtaacatggctctgaagtttgaa
ggagccaaaggacagaagggggagcagggtgtgccgggaccgccgggtcctcctggaaag
caggaggagcagagtcgatcaccagaagatgtgattcagagaggagataagggtgacccc
ggatatcctgggcctcgaggggacccgggctccccaggaccccctggcccatccggtgga
aggaaaggagagaaaggagagcccggagagccaggcaaacgaggaaaaccaggaaaagac
ggcgatccaggtccttcaggaatcccaggattcaagggggaaccgggcctgccgggtctc
ccgggccgggatgggggagctggacagaagggggaacgtggatacccaggtcctccagga
gaggttatcggtggcattgatcaaggtcgggttggcccaaagggtgaaccgggtataccg
ggatcaccgggacccaaaggtgacagaggaccacaaggtttctccggacctccaggagaa
ccgggtcgcccggctacaggaggcagtggtttgcccggagctccaggctatccaggagag
aagggccaaaaaggacgacctggagatccagggatctcgctgcccggcccgccagggcgt
caaggaggtcctgggcctcccggtccacaggggcctcctgggcctcaaggtttttcctcc
tccacagacaactgccctccgggagcgcctggaattcctggacccttgggagataggggt
ttcccaggagaacagggtcagaaaggtgagaagggggacacctgtgtgaactgcttcgga
gtcaccaacggcgtccctggaccccagggacctcctgggcagcctggatttcctggaacg
cctggccccgcaggagtcaagggggacagaggattcccaggaccaactggtccaaccgga
cctcctggtaatcctggtcctcaagggcctgcagggttccgtggggagaaaggagatcca
ggagaagctgtcagcgtttcaggtctgaagggggagaaaggtgacactggctttcctgga
ttgcccggtccatctggtttggatggtcgaccgggtcgggatggaccacccggacctcct
gggcccaaaggactccctggttcttcacggacgaaaggagagccagggccacccggtgaa
ccaggtgtacctggcatccctggagacagaggtcctcctggttcacctggttatggacct
ccaggaccacaaggagacaaaggtgtccagggtgtgtctggaagaccgggaccttctgga
aatccaggtcctaaaggtgaaccgggtctagcagtggcagagaaaggtttaccaggaccc
agaggacaggatggtgagccaggacgtccaggtccaccaggaaccccaggtcagcctgga
cagcctggcttccctggttcaccaggagggaagggtgatccaggagtcccaggaagcgga
ctgcctggccctcctggacctaaaggattcccaggtattccaggtcagccaggtgcacct
gctgaaccaggtagaccaggagtggatggattccctggccagccagggctccctggaccc
aagggagagcctggatttggacttcctgggcccccaggtcagccaggactacaaggacca
aagggttttgctggaccaaagggagatccaggttttcctggaagtcctggtcagccagga
cgttctggattcgacggagttccaggtctcaaaggtgagcctggaacacctggtattccc
ggacctcgaggaccacctggaaccccgtcttctggagcccctgggcccatgggtcctcct
ggatttcctggtccaacaggatcacctgggttccctggagcgaagggagctaaaggagac
cccggtattccaggtagagacatgccaggtcaaccaggagaaagaggaaatcctggtttc
ccaggttccccaggaccagtgggaactccgggaccacctggaggtcctggacgtgatggc
attcccggagctccaggtcagaagggtgacataggtcccatgggccctcctggaccttct
ggaggaccagggggtccaggaatccccggtggtccaggatttaaaggtgatccaggcttt
ccaggaagagatggcccaccaggccctggtggtccaaaaggagacaggggagatcctggt
ctgccaggccctccaggattctccaggccacaagaaaacattaaaggaattaaaggagat
cctggaccaccaggccctgcaggttttccagggcagaagggcatcgctggacttcccggt
gaccctggtcttcctggaacagatggacggcctggaactccaggaccacaagggcctaag
ggagattctggtatccctggaagtccgggtggtcctggattcccaggtccaaagggcaac
atgggggatatgggaattccaggaccttcaggtctgaagggtctcccaggtatttcagga
aggccaggatccccaggtcaacccggagcacctggtttcccaggaagtaaaggtgaacct
ggctctgctggtgttggacctccaggactgtcggggcagaagggtgagccaggccagccg
ggattcccgggaagtccaggattgaaaggaagtccaggattacctggactttcgggtgga
ccgggaggaccaggtgctaagggggagcctggcctgccaggatttataggatctccaggt
cccacgggccctaagggtctagatggagagcctggtattccaggtctcccaggtggtcca
ggtagaccaggagagccaggtttgcctggacaaccaggaatccgtggagacaaaggtcaa
gcaggtcgggacggaattccaggaccaccaggagtcaaaggagatccaggaattcctggt
tttggtggtcctggtccttcagggattcctggtatcccgggcacaaagggagacccaggt
cttcccggtccagctggtactccaggttttcctggtccaaaaggagaccgaggctttgac
ggatccccgggtgttcctggtaacccaggtaaccctgggtcccctggacgttccattccg
ggccctaaaggtctccaaggaccaccagggccgcccggaagagaaggcctcccaggtcct
gcaggtctccctggacctgaaggtccccgtgggcccccaggaggtggtggcgtcaaaggg
gaaaagggctttcctggttctcccggccaaccaggcttccccggacagaagggggatcct
ggaactccaggaattcctggcccccctggaaatagtggtcttccgggtttgaaaggagac
tctggagtgcctggtgttcctgggtttcctggaccaaagggggacccgggtccacagggt
cccagtggttttcctggagatcctgggagtctgggaccacccggtctccctggtgagccg
gctgtactacccccacctggctatgtgaagggagtgcgagggccccccggtccccccggc
ggtcctggtcctaaagggctgcccgggaatccaggtcaaaatggagagccaggtccccca
ggtgctcctggagatcccggtctggacggtcctcctggtttcaacggcccacctggtctg
aagggagacctcggacctcccgggcagcctggccagcagggcagacctggtcctcaaggt
ccagatggcccacagggtcctgttggtccatcaggatccgcgtcggcccatggcttcctc
atcacccgacacagccagactcaagaggttccgtactgccccgacggcaccagcctgatc
tacgacggctactcactgctgtacgttcagggcaacgagcgtgctcatgggcaggatctc
ggcacggccggcagctgcttgcgcaggttcagcaccatgcccttcatgttctgcaacatc
aacaacgtttgcaactttgcttctcgcaatgactactcctactggctgtctacccccaac
gaaatgcccatgtcccccatcacaggagagaccatcaagcctcacattagcagatgttcg
gtgtgtgaagctcccgccatggtgatcgccatccacagccagaccatccagatccctgag
tgtccccagacctggcagacactgtggatcggatattctttcatgatgcacaccagtgca
ggtgcagagggctccggtcaggctctggcctcccccggctcctgcctggagagtttccgg
agctcccccttcatagagtgccacggaagaggaacgtgcaactactacggaaactcctac
agcttctggctggccaccgtggacttttcagagatgttcagaaagcccgagccggagacg
ctgaaggcggggaacctgcgctcgcgcatcagccggtgtgcggtctgcatgaaaaggacg
ctgaccaatttttaa

DBGET integrated database retrieval system