Oryzias melastigma (Indian medaka): 112156111
Help
Entry
112156111 CDS
T07439
Name
(RefSeq) phospholipid-transporting ATPase ABCA1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml02010
ABC transporters
oml04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
112156111
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
112156111
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
oml02000
]
112156111
Transporters [BR:
oml02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
112156111
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DUF4162
AAA_15
AAA_23
MukB
Motif
Other DBs
NCBI-GeneID:
112156111
NCBI-ProteinID:
XP_024144041
Ensembl:
ENSOMEG00000005308
LinkDB
All DBs
Position
LG18:complement(9008344..9209811)
Genome browser
AA seq
2074 aa
AA seq
DB search
MGLLTQFSLLLWKNFTLRKRQKVRLLVEILWPLFLFFILVTVRTTTKPSNKGQCHYPNKA
MPSAGVLPWLQSMMCNIDNPCSNYPTPGETPGQVNNFNDSIISKILINLQSFLLEIPEEG
LWSNSMESLVNSSAEAVNSLDFQNDPINSFSMLLCGKQLSSNSTFKFPESEQTYNINSSS
NSSQGSDPFCTSFIDTLVNTPSMNFLWNNFRPLLRGKILYTPDTPAARLLVEEANSTFST
LAAIKELADSWGKQGPIIWNIVENITVLETEFGADFNNSDGDPPSTSRDAYNNVTQIMSL
ISKILGCFELNKFEAVPTEYELVTKSLDHLNNDTFWAGIVFENLQPNSSRIPPYLKYKIR
MDVEEVQRTDKVESRLWSPGARDNPYEDLRYIWGGFAYLEDIIDHASIRLQTSKNQPLGV
FVQQMPYPCYVDDPFIQSIGAILPMFLILAFMSSVSMTIKGLVLEKELRLKEVLRAVGIQ
NGALWFSTFTETMILLTVPCVLISVMVKYGKVLQYSDPSVVFVFLLVFCFATISQCFLIS
VFFSKANLAAACGGLIYFLLYLPHVLCYAWRDVMGFNAKVGVSLLSCVAFGYGCENLSKY
EEQGVGIQWHNIAKSPEEGESYTFIVSILMMLLDAVIYWVLTWYIENVFPGQYGIPKPWY
FLFTSSYWCGKTAVPEDTDNFDKLKGSSVQNEYMEKPDPNMKAGVSIRNLVKVYKTGKKV
AVDGLSMDFYENQITSFLGHNGAGKTTTMSILTGLFPPTSGTALINGYDIRTDMDTIRGC
LGMCPQHNVLFDELTVEEHIYFYGRLKGLNGSELKTEMDQMIKDVGLLHKRKDLAKNLSG
GMQRKLSVAIAFVGGSKIVILDEPTAGVDPFARRGIWDLLLKYKKGRTIILSTHHMDEAD
ILGDRIAIISHGKMRCCGSSIFLKKSFGSGYYLTLVRSGTEIMTAQRSGIILGKIEEEPN
ESDSPSGSTLDEGFGSQSSDNSNPADLNHVTQFVRRHVPEAVFLESIGQEITFILPYARA
RDGTFATLFQELDQVMDKLGLTSYGVSDTTLEEIFLKVAEDTGVDKEISPTKEPVVKDYK
KNSRESKRRSISRLHGRAEKAKGKDELKEKFCNKVEDCRKNASVSGRGSVVITGWELIRR
QFLALFIKRFHHARRSRKGLIAQVVLPAVFVCLALVFSLIVPSFTEYPNLELQPWMYDAS
QTTFYSDDTPDDANASRVVETLVDNPGFGTRCMEGDPIPGLPCSSGASDWFSPSVDQSIA
DIFLTGNWSMSNPSPSCQCSTPGRTIIMPDCPPGAGGLPPPQRVQNTTDTLLNLTGINMT
DFLVKTYEHSGKKRYGGISVGGINSQVILTEVEIEDAFRKLRNTFFWSERGIPEDTFQKA
EMVLKRLGTRNNIKVWFYNKGWHSMVSFLSVANNGILRGNLPEGLNVRQYGLSVSNHPLN
LSKEQMSLSAMASTSSDVVVSICVIFAMSFIPASFVLFLIQERVSKAKHLQFVSGVNPAI
YWIASFTWDICNYIIPCFLVVVIFICFQQKAYVSPPNLPALILLLVMYGWAITPMMYPAS
FIFTVPSTAYVVLTCVNLFIGINGSVATFVMEIFDDENITYINDIVKQVLLVFPHFCLGR
GLMDMARNQIMATIYSNFGEDRFEDPLSWNMTGKNLVAMAIQGAVMFAFTLLIQYKFFYK
PRLASPKIRSEEEEDEDVARERQRVYEGRAENDMLRIRDLTKVYPRKSTPAVYRLCVGVP
AAECFGLLGINGAGKTTTFKMLTGDIPVSSGEAFLNGYSIRTQMSDVHQNMGYCPQFDAI
NDLLTGREHLELYARLRGVPEHEVAMVAEWGIKKLGLVQYANKSAGTYSGGNKRKLSTAM
ALIGCPPVIFLDEPTTGMDPKARRFLWDCILSVIKEGRSVVLTSHSMEECEALCTRMAIM
VNGRFKCLGSIQHLKNRFGDGYTLIVRVGGRPPVLKPVEDFVEETFPGSVLKEKHHNTLQ
YQLPNNEGALAKIFNELTHHQQRLDLEDYSVSQTTLDQVFVNFAKQQHDEEDLQGYDNSV
DLSDEFPLKKVETVSQENDVYWAKQDDALFRPQQ
NT seq
6225 nt
NT seq
+upstream
nt +downstream
nt
atgggtctcctgacgcagttctctctgctcttgtggaagaacttcactctccggaagaga
caaaaggtacggctgctggttgaaatcctgtggcctctgtttctctttttcatcctggtg
actgtccgaaccaccaccaaacccagtaacaaaggacaatgccactatccaaacaaagcc
atgccgtcagctggcgttctgccctggctccaaagtatgatgtgcaacattgacaatccc
tgctccaactatccgacgccgggagagacgccaggtcaagtcaataacttcaatgactcc
ataatctctaaaatcctaataaatctgcaaagcttcctgctggaaatacccgaagaaggt
ctttggtccaactctatggaaagtttggtgaactcttccgctgaagcagtgaattccttg
gatttccaaaacgacccgatcaacagtttctccatgttgctgtgcggaaagcagctgagc
tccaactccaccttcaagtttcctgaatctgaacaaacttacaacatcaattcaagctcc
aacagtagccaaggttccgatcccttttgtacatcttttatcgacaccctggtgaacaca
cctagcatgaacttcctttggaacaactttaggccgctgttgcgagggaagatcctctac
acgcctgatacaccggctgctcgcctcctggtggaagaggctaatagcacattcagtacc
ctggctgcgataaaggagctagctgattcttggggcaaacagggaccgattatctggaac
attgtggaaaacatcactgttttggagacagagttcggtgcggacttcaacaactcagac
ggagaccctccatccacatcgcgagatgcttacaacaacgtcacacagatcatgagttta
atttccaagatcctcgggtgctttgagctgaataagtttgaggcggttcccactgaatat
gaactggtgaccaaatccctggaccacctgaacaacgacaccttctgggctgggattgtc
ttcgaaaatcttcaaccgaattccagcagaatcccgccttacctcaaatacaagatccgt
atggacgttgaggaggtgcagcgaacagacaaagtggagagcaggttatggtctcctgga
gcccgggacaacccctatgaggacctacgctacatatgggggggcttcgcctacctagag
gacatcatagaccacgccagcatacgactccaaacgtccaagaaccaaccgctcggtgtc
tttgtccagcaaatgccatatccctgctacgtggatgatcccttcatacagagtattggc
gccattctccccatgttcctcattctggctttcatgagctccgtgtccatgaccatcaaa
ggcctggtgctggagaaggagctccggcttaaggaagtgctccgtgccgttggcattcaa
aacggtgccctgtggttttccacgttcacagaaaccatgattctgctcacagtgccctgt
gtgctcataagtgtcatggttaagtacggaaaagtcctgcagtacagcgacccctctgtc
gtctttgtcttcctcttggtgttctgcttcgccaccatctctcagtgcttcttgattagc
gtcttcttctccaaagccaacttagcggcggcgtgtggcggactcatctactttctcctt
tacctcccgcacgttctgtgctacgcatggagggatgtcatgggctttaacgccaaagtc
ggagtgagcctcctgtcatgtgtggccttcggctacggctgcgagaacctgtccaagtat
gaggagcagggcgttgggattcagtggcacaacatcgccaagagtccagaggaaggagag
tcctacaccttcatcgtgtccatactgatgatgctgttagatgctgttatctactgggtt
ttaacctggtatattgagaacgtttttccaggtcaatatggaatcccaaagccgtggtac
ttccttttcacttcctcctattggtgtgggaaaaccgcggttcccgaggacaccgataac
tttgacaaactgaaaggctccagtgtacaaaatgaatatatggagaaacccgatcccaac
atgaaggcgggggtctccatccgtaaccttgtcaaagtctacaaaactgggaagaaagtg
gcagtggacggtctgagcatggacttctacgagaatcagatcacgtcttttcttggccac
aacggagcgggaaaaacaaccacaatgtcaattctgacaggcttattcccacctacctct
ggaacggcgctcattaacggctacgacattcgcaccgacatggacaccattcgggggtgt
ctgggaatgtgtcctcaacataatgtcctattcgatgagctgacggtggaggagcacata
tacttctacggccgtctgaaaggactcaacggcagcgagctcaaaaccgagatggaccag
atgattaaagacgtcggcttattgcacaagcgaaaggatctggctaagaacctgtcaggt
ggcatgcagagaaagctgtcggtggctatagcttttgttggtggttcaaaaatcgtcatc
ttggatgaacctacagcgggagtggacccttttgctcgcaggggtatctgggacctgttg
ttaaagtacaagaaaggtcggacgatcatcctctctacacaccacatggacgaggcggac
atcttgggcgatcgcatcgccatcatctcccacgggaagatgcgttgctgcggctcctcc
atctttctgaagaagagctttggcagcggctactacctcacgctggtccgaagcggcacg
gaaatcatgacggctcagaggagcgggatcattcttggaaaaatcgaggaggaaccaaat
gagtcagacagcccttcaggcagcaccctggatgaaggttttgggagtcaaagctcggac
aactccaatccagcagatctgaaccatgtgactcagtttgtgaggaggcacgttcccgag
gcggtcttcctggagagcatcggtcaggagatcaccttcatattgccctacgccagagcc
agagatgggacctttgccacgctcttccaggagctcgatcaagtcatggacaaactgggc
ctgaccagctatggtgtctctgacaccacactggaagagatatttcttaaagtggccgaa
gacactggagtggacaaagaaatatcaccaacaaaggagccggtggtgaaggactacaaa
aagaactccagagaatcgaagaggaggagcatctccaggcttcatggcagagcggagaaa
gccaaggggaaggatgagttgaaggaaaagttctgcaataaagtagaagactgcaggaag
aacgccagtgtcagtggaaggggatccgtggtcatcaccggatgggagctcatcagacgg
cagttcttggctctcttcatcaaacgcttccaccacgcccggcgaagccgcaagggactc
attgcccaggtggtcctccctgctgtttttgtgtgcctggctttggtcttctccctcatc
gtaccgtcttttaccgaatatccaaacctggagctgcagccatggatgtacgatgcctct
cagaccaccttttatagcgatgacacgcctgacgatgcaaacgcatctcgggtggtggaa
accttggtggacaaccccggatttggtacacgctgcatggaaggagaccccataccggga
ctgccgtgttcctccggcgcctccgattggttctctccttctgtggatcagtcaatcgct
gacatcttcctcaccgggaactggagcatgtctaacccctctccctcgtgtcagtgcagc
actcccgggcggaccatcatcatgcctgactgcccgcccggcgcggggggtctccctcca
cctcagagagtacagaacacaacggacaccttgcttaatttaactggaataaacatgaca
gacttcttggtgaagacatatgagcactctgggaagaaaagatatggtggcatctcagtt
gggggcatcaactcacaagtcattttgacagaggtggaaatcgaagatgcattcaggaaa
ctacggaatacatttttttggagtgagagaggcatccccgaggacactttccagaaggca
gagatggtcttgaagaggctggggaccagaaacaacataaaggtgtggttctacaacaag
ggatggcacagcatggtttccttcctcagtgtggctaacaatggcatcctaagagggaac
ctacctgaggggttgaatgtccgccagtacggcctctccgtgtctaatcaccccctgaac
ctgtccaaggagcagatgtctttatcagccatggcctccacttcatctgacgtggtggtg
tccatctgtgtcatctttgccatgtccttcatccccgccagcttcgtcctcttcctcatc
caggaacgggtcagcaaagccaagcatctgcagttcgtcagcggagtaaacccggcgatc
tactggatcgccagttttacctgggacatatgcaattacatcatcccctgttttctggtg
gttgtgatctttatctgctttcaacaaaaagcctacgtttcccctccaaaccttcctgca
ctcattctgctgcttgttatgtatgggtgggccatcacccccatgatgtacccggcgtct
ttcatctttacggtgccaagcacggcgtacgtggtgctgacctgcgtcaacctcttcatc
gggatcaatggcagcgtggccacctttgtcatggagatctttgatgatgaaaacatcacc
tacatcaacgacatcgtgaagcaggtgctgctggttttccctcatttctgtctgggcaga
ggactcatggacatggccagaaaccagatcatggcgacgatatatagtaactttggtgaa
gatcgcttcgaagaccctctgagttggaacatgactgggaaaaacctggttgccatggcc
attcaaggagctgtcatgtttgcgttcacccttctgatccagtacaagttcttctacaaa
ccgaggctggcctcgccaaagatccgatcggaggaggaggaggacgaggatgtggcccgg
gaacgccagcgggtgtatgagggcagagccgaaaacgacatgctgaggatccgcgacctc
acaaaggtttacccccggaagagcaccccggccgtgtacaggctgtgtgtgggcgtacct
gctgcagagtgcttcggcttgctggggataaacggagctgggaaaactaccacgttcaag
atgctgacaggagacatcccggtctctagcggagaggcctttctaaatggatacagcatc
cggacacaaatgagtgatgttcaccaaaacatgggctattgtccacaattcgatgccatc
aatgacctgctgactggacgggagcacctggagctgtacgcccgcctaagaggagtgcca
gaacacgaggtcgccatggtggcagagtgggggatcaagaagttggggctggtccaatac
gccaacaagtcggcgggaacgtacagcggcgggaacaaacgcaaactgtccacagcgatg
gctctgatcggatgcccccctgtgattttcctggacgagcccaccaccgggatggacccc
aaagcccggcgtttcctgtgggactgcatcctgagtgtcatcaaagagggccgctcggtc
gtcctcacgtcccacagcatggaggaatgtgaagcactgtgcacccgcatggccatcatg
gtaaacggacgcttcaagtgtctcgggagcatccagcacctgaagaacagattcggcgac
ggctacacgctgatcgtgagggtcggcggccgtccccctgtcctgaagccagttgaagac
tttgttgaggaaactttcccgggcagcgttctcaaggaaaagcaccacaacacgctgcag
taccagctcccgaataacgagggagccctggccaagatcttcaatgaactcacccaccat
cagcagagactggacttggaggactactctgtgtcccagacaactttggatcaggtgttt
gtgaattttgcgaaacagcagcacgacgaggaagaccttcagggctacgacaactcggtg
gacctctccgatgagtttcccctgaagaaagtagagaccgtctcacaagaaaacgatgtt
tactgggcgaagcaagacgatgcacttttcagacctcagcaataa
DBGET
integrated database retrieval system
