Oryzias melastigma (Indian medaka): 112156147
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Entry
112156147 CDS
T07439
Name
(RefSeq) collagen alpha-1(XXV) chain isoform X1
KO
K24356
collagen type XXV alpha
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
oml00536
]
112156147
Glycosaminoglycan binding proteins [BR:
oml00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
112156147
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
112156147
NCBI-ProteinID:
XP_024144095
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All DBs
Position
LG18:complement(11406634..11580003)
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AA seq
725 aa
AA seq
DB search
MICTRWFKFLRDRLDLIQTLDVQGLLVKTQRNANKDAAALQRRHFNGRQTKLVSMDTNGG
ERTFSTSSHKQRRKNSVASIALCVHLSVDTADIKNRVVDLESGTGEHTFIHGSGYSVEDL
NSLVQQRVDELLSQRTYENFIKIRTARQTSPECNCPPGPPGKRGRRGRDGEPGPPGPPGP
KGEKGDQGDQGPRMVFPKINHGFLSADQQLIKRRLIKGDQGQAGPPGPPGPPGPPGPRGP
PGDTGKDGPRGVPGLPGDPGNMGESGAMGPQGPQGPKGSLGPPGIPGVDGQKGDLGIPGQ
DGIPGAKGEMGERGEKGDMGEEGPKGDMGEKGDAGSSAAGIKGEPGEPGRSGQKGEPGLP
GLPGLPGIKGEPGFLGPQGEPGLPGLPGTKGERGDHGPPGKGERGELGPVGPKGSQGEAG
TPGLKGSKGETGDKGEMGSAGPKGPPGQKGDQGTTEIIDYNGNIQEALQKITTITVTGPP
GPAGPMGPPGMKGDRGMPGLPGLDGERGYKGSKGDMGMPGASGEKGTTGLPGLPGVNGVK
GDKGDSGLPGSQGPSISGPPGPPGPHGPPGPMGPHGFPGPKGEPGLHGLKGIRGEPGHKG
DRGPLGLPGASGLDGKPGIRGMDGPPGPSGPAGPKGDMGEKGSPGEPGPRGPYGLPGAAG
TPGLDGLPGLRGEKGDEGERGEKGEKGKKGKKGPKGEKGEQGAPGLDAPCPLGPDGLPMP
GCWQK
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atgatctgcaccaggtggttcaagtttcttagagatagattagacctgatccagactctt
gacgttcaaggtctgctcgtcaaaacgcagaggaacgcgaacaaggatgctgccgctctt
caaagaagacacttcaatggacgccaaacaaagctggtctccatggacaccaacggagga
gagcgcacttttagcacaagttcacacaaacaaagaagaaagaattctgtggcgtccatc
gccttgtgcgtccatctgagcgtcgacacggctgacatcaagaaccgagttgtggatttg
gagagcggcacgggcgagcacaccttcatccacggctccggctactccgtggaggatcta
aattctctggttcagcaaagagtggatgagctcttgtctcagcgcacatatgagaatttc
atcaagattcggactgccagacaaacatcacctgagtgcaactgccccccaggacctccg
ggtaagcgtggaagaagaggccgcgatggagaacctggacctcctggtcctccaggtcca
aaaggtgaaaagggggatcagggtgaccagggcccacggatggtcttccctaagatcaat
catggctttctttccgctgaccagcagctcataaagcgacggctcattaagggagatcaa
ggccaagcagggccgcctggcccaccggggccaccgggtcctcctggaccgagggggccc
ccaggggacacaggaaaagatggaccccgcggcgtaccgggtctgccaggtgatccaggg
aacatgggagaatcaggagccatgggacctcaggggccacaagggccaaagggatctttg
ggacctcctggaattcctggtgttgatggacagaagggggatcttggcatcccaggacag
gacggtatcccaggggccaagggtgaaatgggagaacgaggtgaaaagggcgacatgggc
gaagagggaccgaaaggtgacatgggggagaagggagacgccggttcatccgctgcaggc
attaagggggaacctggagaacctggaagaagtggacagaagggagagccaggacttcca
gggctgcctggactcccagggataaagggagaacctggattcctcggcccacagggagaa
ccagggcttccaggactcccgggaactaaaggtgaaagaggtgaccatggacctccagga
aagggtgaacgaggagaactgggacctgttggaccaaagggttcccagggagaggctggt
acacctggcttgaaagggtcaaagggagaaactggagataaaggggagatggggtcagcc
ggtccaaagggacctccggggcagaaaggagaccaaggaacgacagaaatcatcgactac
aacggaaatattcaagaagctttacagaagattaccactattacagtcacgggtcctcct
ggcccagctggaccaatgggaccaccgggcatgaagggcgatcgtggtatgcctggcctc
cctggacttgatggagagagaggctataaaggttccaaaggagacatgggaatgccggga
gcctcgggggaaaaaggaacaactggtttgccaggtctacctggtgtcaatggggtaaaa
ggagataaaggagattcaggacttcctggttcacaaggtccatctatcagtgggcctccg
gggccaccaggaccccacggccccccaggacccatgggaccccatggcttccctgggcca
aagggggaacctggtttgcacggtttgaagggcattagaggagaaccgggacacaaaggg
gaccgtggacctctgggtctccctggagcctccggcttggacggcaagcctggaattagg
ggcatggacggacctccgggtccatctgggccagccgggccaaagggggacatgggtgaa
aagggatctccaggtgagccaggaccacgaggaccctacggactaccaggagctgctgga
acaccaggattggatgggttaccaggcttaaggggagagaaaggagacgaaggggaaaga
ggagaaaagggggagaagggaaagaaaggcaaaaaagggcctaagggcgagaaaggagaa
cagggtgccccaggattagatgcaccctgcccattgggtccggatggattaccgatgcct
ggatgctggcagaagtga
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