Oryzias melastigma (Indian medaka): 112156244
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Entry
112156244 CDS
T07439
Symbol
frem1a
Name
(RefSeq) FRAS1-related extracellular matrix protein 1a
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
112156244 (frem1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
oml04091
]
112156244 (frem1a)
Lectins [BR:
oml04091
]
C-Type lectins
Lecticans
112156244 (frem1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Big_9
Lectin_C
Calx-beta
Motif
Other DBs
NCBI-GeneID:
112156244
NCBI-ProteinID:
XP_024144238
LinkDB
All DBs
Position
LG18:complement(24508728..24544542)
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AA seq
2176 aa
AA seq
DB search
MGSAGQTLALMLLPVLLLGLTCSSRGSLVKVNRGLKVMRGQTTVLKESDLQFHIPTEENS
CKVEVVLTEPITQRVGKLLPQVFDCHFLTDEVKYFHNGCPLLQEDTVKLRLYRFTETETY
MEVFSLHVEIMDPECSIIKLGPKSLEVPEFYGLSDAVDGNVVSFHYERRSNLECSIHISI
HDTHLPAHGQLVTGEPEKATTRGDEPESFIHLRQQLDNKARATCKSESCLKGLKLAQFTK
VSCHDFLEMGLKYQHTDPPSPDVDYIAIRLDLKDTRSGSIYKSEQAWIPVRIVGAMPNQH
PKPSFMSMYILEVDQFILTPLSTATVNAEDEETPQQLLVFNITKAPEEGFITHLSDHTRA
VSSFTWLDLNDMLVGYQPPNSSHPQRRNYEVEVEVYDFYFEKSQSMTIHVSVRNADTNAP
RVSWNMGLSLLEGQSRPIIWDQLQIVDNDDLNAVRIITVDGLQHGRLTVRGGKSFMFTVS
DIKSGVVHYHHDDSDSSKDFIIFRITDGHHQTRHKFPIKILPKDDSPPFLITNMLLKVTE
GQTALVRGSTLQASDMDSSDDYILFNITHLPQAGEVMKIPEAGQPGYAVRHFLQKDLSQS
IIYYRHFGNEVFDDSFEVVLSDFHDPPNLSEPQVVMIHIEPVPDQPPKEVPGSSRCLVVK
ESDVVRITQQHLHFVDLESPERELTYTVTTPPFYTGPHKSSSPDAGKLFLIDDIPTLTKD
PNAPALRLFSQHAVNFMKVAYMPPITDIGPYPQHIQFILSITNHLGRTVPGICFNITVMP
VDNQPPQVITGLLTVDEGGQRWLGPEHVLLSDVDSIEDLLQLQLQREPEHGVLQLNKHPL
TPLQTFTMQELKSFQVSYTHDGSETIEDTIQFAATDGTNSVKFTLQVKVTPINDEIPVIV
AGLKPVLQCAEGEEMVITAEYIYATDPDSNSSSLAVLIARQPYHGVVLRNGVVVDRFIQA
DITAGIISYRHTGLEIGLTPRQDTITFVISDEETESSASCCSGLNVIKSKGTTRLRSNLP
LYDLHVTVFPVDNQPPSLTTGAIFMVDEGGSGSITTFHVKASDMDTVEDELTISLISPPQ
FGYIENVLPSPGFEKSNTGISIASFSYEDVIEGHINYVQSKHQRLEPTADQFILCVSDGT
RSSANVPFHVIINPTNDEVPDIVANNITVPEGGMKRLVLHATDMDVPKNLLLITVVTPPQ
HGSIVTHKGGTITKRHGDNPSPVVDFTMEDLHRGLDLMYAHDDSENMEDSFSIRLTDGKH
QVDKRVMVEVLPVNDEEPRVIRNNGLEVEPGEARIISSVTLLAQDGDTPPSEVIFVFESV
PNLGVLQLKENERWETLTAGRNCTQESVDLNLLRYVHVGLHAAKTQDLFVFHLQDGKHQS
PPQLFHISVKELKKGNIAIFVRPVTLSRGDRVVLTTDVLLATDDSDKPEELLYVITKPPA
HGHIEYIKHPGLSISTFSQMDIAANLVAYVHDNRASRTTETFQFVVSNGKSSQSGSFELQ
VEMVDRVLPALTNNKGLRIPQGSVMILGPDSLTLSDPDTPPTNLTFVLTELPKYGRLLRS
SKSLDAGSNFTQADINQLEVAYAHDGGPSQIDRFAFTASDSTNRGFLLDGQLQTEPVFFA
VQIKSLDNSPPELVRLLPLWRAESLTDGRFGIFVSSRELKAQDAESREEEVVFSIVRQPY
FGYLENVTTGGFVSQRFSQTDLNKRSIVYVINPNSESLSDSLEFRVSDSLGNMGPSHILK
FMWSSVEFSRADSSACEQQGTLSMEVIRRGHLAESAFVTIKVQEETAAAGKDFLTSPSPL
IQFDPGVTKRKWQMEMIQDHLEEADETFEVQLVSPEAAVTGRTQKARITIRDSGTDECRL
NQDSPLIGGEEIKSDKYPEHGSIQLEKLPLGTESVVWARGDSISRPKTVPHNKRLRVEDN
PRSIGPSSVFHNGTDVIYTYHGMVQMQVEDETSPSRRGRKAHIQVVSRGEQQRTPVEKSD
STRHIPKSRKHSQLSGEQMPSDSSVPKPCAPELTGLLHYNHTISQLFHCNGVSWKPWTPT
QQMLKAQMCPKGWSFHSGYCYILSTEHKVTWSAANRACREKYKGTLTSVLSKANMDFLWN
FSGRKPFWIGLNDLEGRGRWEWVASDPVSYTNWKKMPPRSKGRASKRCVLVHRRAKWQMR
ECRSGRGHRFVCSIKT
NT seq
6531 nt
NT seq
+upstream
nt +downstream
nt
atgggttcagcgggtcaaactctggccttgatgttgctcccggtgcttctgctcggatta
acctgctcctctcgtggttcccttgtaaaagtcaacaggggtttaaaggtgatgcgaggt
caaacaactgtcctcaaggagagtgacctacagttccacattcccactgaggagaattca
tgcaaggtggaagtagtgctgactgagcccataacccaaagagtaggaaaactcctgcct
caggtgtttgactgtcattttctgactgatgaggtgaagtattttcacaatggctgtcca
ttattacaggaggacacagtcaaacttcgtctgtacagattcacagagacagagacatac
atggaggtgttctctctacatgtggaaataatggatcctgagtgcagcatcataaaacta
gggcccaaatccctggaggtccctgagttctatggcctctccgatgctgttgatgggaat
gtggtgtccttccactatgagaggagatctaacctggagtgtagcatccacatcagcatc
catgacacccacctgcctgcccacggccaactcgtcacaggagagccagagaaagccaca
acaagaggggatgagccagagagcttcattcacctgcgtcagcagctggataataaagct
agagccacttgtaaatctgaaagctgtctgaagggtctgaagctggcacagttcaccaaa
gtttcctgccatgacttcctggagatgggactgaagtatcagcacacagaccctccatct
ccagatgttgactatattgcaatcagactggacctgaaggacaccaggagtggcagcatc
tataagtctgagcaggcttggatccctgtgcggattgttggcgccatgcccaaccagcat
cccaaaccatccttcatgtccatgtacatcctggaagtagaccagttcatcctcacgccg
ctctccacagctactgtgaacgctgaagatgaggaaactcctcagcagctgttagtcttc
aacatcaccaaagccccagaggaaggcttcatcactcacctgtcagaccacacccgtgca
gtttcctctttcacctggcttgatctcaatgacatgcttgtagggtatcagcctccaaat
tcctcacatcctcagcgtaggaattatgaggtcgaagttgaagtctacgatttttacttt
gagaagagccagtcaatgaccattcacgtctctgtgaggaacgcagacacaaacgcaccc
agagtttcctggaacatgggtctcagcctgttggagggtcaatctcgtccaataatttgg
gatcagctgcagattgtggataacgacgatctgaacgctgttcgaatcatcacagtggac
ggtttgcagcacggccgcctgactgtaagaggtggaaagagcttcatgttcactgtcagt
gacattaaatctggggttgttcactatcaccatgatgacagtgactccagtaaggacttc
atcatcttccgcatcaccgacggtcatcatcagacccgacacaagttccccatcaagatc
ctgcccaaagacgacagccctcctttcctcataacaaacatgctgctgaaggtcactgaa
ggccagacagcactcgtgagaggctccaccctccaggcatcagacatggactccagtgat
gactacatcctctttaacatcacccacctcccacaggcaggagaggtcatgaaaatccca
gaagcagggcagccaggttatgcagtcagacactttctccagaaggacctctctcagtcc
atcatttactacagacactttggaaatgaggtgtttgacgactcctttgaggtggtgctg
tctgatttccatgacccccccaacttgtccgagcctcaggtggtgatgatccacattgaa
cctgttccagatcagccaccaaaggaagttcctggttctagtcgatgtcttgtggtaaaa
gaatcagacgtggtccggatcacgcagcagcaccttcattttgtagacctggagtctcca
gagcgtgagctgacttacacggtcactactcccccgttctacactggtccccacaagagc
agcagtccagatgcagggaagttgttcctgattgacgacatacccacgctcacaaaagac
cccaatgcacccgcccttagacttttctcgcagcatgcagtgaacttcatgaaagtcgcc
tacatgcctcctatcacagacattggtccttatcctcagcacattcagttcattctgtcc
ataaccaaccatttgggtcgaacagttccagggatctgctttaacatcactgtgatgcca
gttgacaaccagcctcctcaggtcatcactggccttctgactgtggatgagggtggacag
cgctggctgggccctgagcacgtgctgctgtcagatgtggactcgattgaagatctgttg
cagctgcagctgcagagagaaccagaacacggagtcttgcagctcaacaagcatccactc
acgcccctccagactttcaccatgcaagaactgaaaagctttcaagttagctacacccat
gatggctctgagacaatagaagacaccattcagtttgctgcaacagacggcaccaactca
gtcaagtttactctacaagtcaaggtgacgcccatcaatgatgagatccctgtaatagtc
gctggcttgaaaccagttctccaatgtgccgaaggagaagaaatggttatcacagcagag
tatatttatgccactgatcctgacagcaacagcagcagcctggcagtcttgatcgctcgg
cagccttatcatggtgtggtgctgcgaaatggtgttgtggtcgatcgcttcatccaagca
gacatcacagcagggatcatatcctacagacacacgggactggagattgggctcactccg
cgtcaggacacgatcaccttcgtcatctctgatgaagagacagagagctctgcttcatgc
tgcagtggactaaatgtcatcaagagcaaaggcacgactcggctgaggagcaacctgcct
ctgtatgacctccacgtcacagtgtttccagttgataaccagccaccttccctaacaaca
ggggccatcttcatggtagatgagggtggaagtggctctattactacttttcatgtaaag
gcctctgacatggacacagtggaagacgagctgaccatcagtctcatttctcctccccag
tttgggtacatagagaatgtcctccccagccctggctttgaaaaaagcaacacaggcata
agtatagcatctttttcttacgaggacgtcattgagggtcacataaattacgttcagtcc
aaacaccagaggctggagcccacagcggaccagttcatcctctgtgtatcagacgggaca
cgcagctctgcaaacgtccccttccatgtcatcatcaacccgacaaacgacgaagtccca
gacattgtggccaacaacatcacagtaccagagggaggaatgaagcgattggtgctgcat
gcaacggatatggatgtccccaagaatctcctgcttattaccgtggttacaccacctcaa
catggcagcatcgtcactcacaagggtggaacgattaccaaaagacatggagacaatcca
tcccctgttgtcgacttcactatggaagatcttcatcgcggactggatctgatgtacgca
cacgatgactctgagaacatggaggacagcttttccatccggctgacagacggcaaacac
caggtggacaaacgggtgatggttgaagtgctgcctgtgaacgacgaagagccacgagtc
attcggaacaacgggctggaggtggagccaggagaggccaggatcatttccagtgttacg
ttgttggcacaagacggagacacccccccctccgaggtcattttcgtattcgagagtgtt
cctaacctaggagtgcttcagcttaaggaaaatgagaggtgggaaacgctgaccgctggg
aggaactgcacccaggaatcggtggacctgaacctcttacgctacgttcatgttggcctc
catgccgccaaaacgcaggatctctttgttttccaccttcaagatggaaaacaccaatct
cccccacagctcttccacatttctgtgaaggagctgaagaaaggaaacattgccatcttt
gtaaggccagtgaccttaagccgaggcgaccgtgtggttctcaccactgatgtgctgcta
gccaccgacgactcggacaagccagaagagcttctgtatgtcatcaccaagccgccggct
catggacacatcgagtacatcaaacatcctggactgagcatctccaccttcagccagatg
gacatagcagcaaacctggttgcttacgttcacgataaccgagccagcaggacaacagag
accttccagtttgttgtaagcaacggtaaaagcagccaaagtggaagttttgagcttcag
gtggaaatggtggatcgagtactgccagctctgaccaacaacaaaggcctcagaatccct
cagggctctgtcatgatcctgggccctgacagcctcaccctctctgaccctgatactcca
cccaccaacctgacctttgtcctaacagaacttccaaagtatggtcgtcttctccgatct
agcaaaagcctggatgctgggtctaacttcacccaggcagacatcaatcagttggaggtg
gcgtatgcacacgatggcgggccgtcgcagatcgatcggtttgccttcacagcctctgac
agcactaacagaggctttttgttggatggacagctgcaaacagagccagttttctttgca
gttcagatcaaatctttggataattcccctcctgaacttgtgaggctgctccctctgtgg
agagcagaaagccttactgatgggcgatttgggatctttgtgtcgtcccgggagctgaag
gctcaggatgctgagagcagagaagaggaggttgtattttccattgttcgtcaaccctac
tttggttacctggaaaacgttactacaggggggtttgtgtctcagcgcttctcccaaaca
gacctgaataaaagaagcatagtctatgtcatcaatcccaacagcgagtctctctcagac
agcctggagttcagagtgtcggattctttgggcaacatgggcccctcccacatactgaag
ttcatgtggtccagtgtggagttttctcgggcggactcctctgcatgtgagcagcaggga
accctctccatggaggtcattcgaagggggcacctagcagagtcagcctttgtcaccatc
aaggttcaggaagaaacagcagctgctggaaaagacttcctcacaagcccttcgcctctc
atccagttcgatcctggagtgacaaagcgaaagtggcaaatggagatgattcaggaccat
cttgaagaggcagatgagacctttgaggtgcagcttgtctctcctgaggccgcagtgact
ggaagaacccaaaaggctcggatcaccatcagagactccgggacagacgagtgccgcctg
aaccaggattctcctctcatcggaggagaagaaattaaatcagacaagtatcctgagcat
ggctccatccagctggagaagcttcctctgggtacagaatctgtcgtttgggcccgagga
gacagcatctcaagaccaaaaacggttccccacaacaagaggcttcgagttgaggacaat
cccagatctattgggccctcctcagtatttcacaatggaactgatgtcatttacacttat
catgggatggtgcagatgcaagtggaagatgagacatctccatccaggaggggcaggaag
gcgcatattcaggtggttagcaggggggagcagcagaggacacctgttgagaagtctgac
tcaacacggcacatcccaaaatcaagaaaacattctcaactttccggggaacaaatgcca
tcggacagctctgtccccaagccctgtgcgcctgagctgacggggctcctgcattacaac
cacaccatcagtcagctctttcactgcaacggcgtgtcctggaagccctggacaccaaca
cagcagatgctgaaagctcagatgtgtccaaaggggtggagctttcacagcggctactgc
tacatcctcagtactgagcacaaggtcacatggagcgcagctaacagggcgtgcagagaa
aaatataaaggaactctgactagtgttctctccaaagctaacatggactttctgtggaac
ttcagtggaaggaagccgttttggattggtctgaatgacttggagggcagaggacggtgg
gagtgggtggccagtgacccggtcagttacaccaactggaaaaagatgcccccgcggtcc
aaaggcagggcaagcaaaaggtgcgttttggtccacagaagagcaaagtggcaaatgcgg
gagtgcaggagcggcagaggccaccgcttcgtgtgctccataaagacctga
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integrated database retrieval system
