Oryzias melastigma (Indian medaka): 112156448
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Entry
112156448 CDS
T07439
Symbol
slx1b
Name
(RefSeq) structure-specific endonuclease subunit SLX1
KO
K15078
structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
112156448 (slx1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oml03400
]
112156448 (slx1b)
DNA repair and recombination proteins [BR:
oml03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
112156448 (slx1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SLX1_C
GIY-YIG
zf-HC5HC2H
zf-HC5HC2H_2
PHD_NSD
zf-RING-like
T5orf172
zf-RING_2
FANCL_C
RING_XB3-XBAT31
PHD
Motif
Other DBs
NCBI-GeneID:
112156448
NCBI-ProteinID:
XP_024144500
Ensembl:
ENSOMEG00000005075
LinkDB
All DBs
Position
LG18:complement(25052907..25056933)
Genome browser
AA seq
261 aa
AA seq
DB search
MVVEVESFFGVYMLYCTNPRFKGRIYIGFTVNPERRIGQHNAGRHRGGAKRTSGRGPWEM
VLVIHGFPSDIAALRFEWAWQHPHSSRRLGHVARRSRKESSLQFHWRVVSNMLRAAPWNR
LPLTARWLKQEYRMDFEPALQPPLHIPIAFGSVRAKKKQQLQIRAEDEASSCFICKGPVA
ASEKVSCFHASCGMSSHLICLARHFLQSEPSQLLPVEGACPSCRRSVLWGSLIRQKHGCL
GDLEEIADFSSPDHWADELQM
NT seq
786 nt
NT seq
+upstream
nt +downstream
nt
atggtagtggaggtggagagtttctttggggtgtacatgctttactgcacgaatcccaga
tttaagggccgcatctacatcggcttcaccgtgaatccggagcggcggatcggccagcac
aacgccgggcgacaccgcggcggggccaaaaggaccagcggaagaggaccatgggaaatg
gtccttgttatccacggctttccctctgacatcgctgctctcaggtttgaatgggcgtgg
cagcatccacactcttcccggcgcttgggtcacgtcgcccggcgctccagaaaagagtcc
agcttgcagttccactggcgggtggtctccaacatgctgcgcgcggcgccgtggaacagg
ctgccgctgacggcccgctggctgaagcaggagtacaggatggactttgaaccagctctg
cagccccctctgcacatccccatcgcttttggaagtgttcgggccaagaagaagcagcag
ctgcagatcagagcggaggacgaggccagcagctgcttcatctgcaaaggaccagtggcg
gcatcagagaaagtgagctgtttccatgcgtcctgtgggatgagcagtcatttaatctgc
ctggccagacatttcctgcagtcagagccgtcccagcttctgccggtggagggggcgtgt
ccttcctgccgtcgctcggtgctatggggcagcctcattcgtcagaagcacggttgcctg
ggagacctggaggagatcgcagacttctcttccccggaccactgggcagacgagctgcag
atgtaa
DBGET
integrated database retrieval system
