Oryzias melastigma (Indian medaka): 112156732
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Entry
112156732 CDS
T07439
Name
(RefSeq) CLIP-associating protein 1-B isoform X1
KO
K16578
CLIP-associating protein 1/2
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
oml03036
]
112156732
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
oml04812
]
112156732
Chromosome and associated proteins [BR:
oml03036
]
Eukaryotic type
Centrosome formation proteins
Microtubules and associated factors
Microtubule-associated proteins
112156732
Cytoskeleton proteins [BR:
oml04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Cytoplasmic linker proteins (CLIPs)
CLIP-associating proteins
112156732
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLASP_N
XMAP215_CLASP_TOG
HEAT_EF3_N
CEP104-like_TOG
HEAT
HEAT_EZ
TOR1L1_N
Sec7-like_HUS
Cnd1
Adaptin_N
HEAT_DAAF5
ParcG
Paxt-1_C
KH_DEAH11_1st
Motif
Other DBs
NCBI-GeneID:
112156732
NCBI-ProteinID:
XP_024144806
LinkDB
All DBs
Position
LG2:complement(16147054..16196848)
Genome browser
AA seq
1614 aa
AA seq
DB search
MEDQGPVSMDYLLEQVMHKDLGRRLQVGQEIAELLMSEDRCPDLDQDQAALDRLVDSVAS
SWVNSSNFKVVLLGMDILSALVGRLQERFRTQVGTVLPSLIDRLGDSKDQVREQDQALLL
KIMDQAANPQYVWERMMGGFKHKNNRTREGLCLCLISTLNVFGSQSLTLSKIVPHICNLL
GDPTSQVRDGAMNCLVEIYRHVGERVRMDLGKKGLPQSRLNMIFSKFDEVQCSGNMVLSP
MSDKNFEDDDSVDGGRSSSSSKATSLSGRKVVSMGSFRRPASGNKSAGRDGSAAGAVDED
DFIQAFEDVPSIQVYSNREVEEALTKIRDVLSDDKRDWELRVAALKKLRSLLLAGAAEFD
GFLQQLRLMEAAFKLSAKDLRSQVVREACITLGHLSSVLGGRFDHAAEAIMPTLLNLVPN
SAKVMATSGVAVIRLILRHTHFPRLIPIITSNCTSKSVAVRRRCFEFVDLLLHEWQTSSL
ERHVTVLMETIKKGIHDADAEARSVARKCYWGFHAHFSREAEQLFQALESSYQKALQAHL
RSGDSLMSLPASDRSSSSSQESLNRPLSVKNSVGSSRSKAVPSTRKPAVATSPGSLHRSR
SDVDVNAAASANARTRMSAVSSAVPSSPFSSASALPPGSYASLDASRSVHTDGRVRTRRT
SSGNGPTVTDSRGRSRGKVVSQSQPGSRSGSPGRLLTSTYGRIPRPTMGAPSPQTPTSSS
YSDKNRPRGHRSQGCSRDSSPTRTGAARSRIPRPSMSQGCSRETSRESSRDTSPARGFSP
LVSRRHSRSTSALSSAESCSDRLSHQARISASVNAMRILNTGTEVEAAVADALLLGDSRS
KRRPARRRFESPGMYSDDDANSDASSACSERSYSSRNGGATPHYMRQMEDVAEVLNHCAS
ANWSERKEGLLGLQNLLKSQRMLSRVELKRLCEIFTRMFADPHSKRVFSMFLETLVDFIV
LHRDDLQDWLFVLLTQLLKKMGADLLGSVQAKVQKALDITRESFPYEQQFNILMRFIVDQ
TQTPNLKVKVAILRYIEALARQMDPADFVNSSETRLAVSRIITWTTEPKSSDVRKTLQSW
AGEEPAGRAGTVASLPGEGNLEERCKQAAQVVLIALFELNTPEFTMLLGALPKTFQDGTT
KLLHNHLRSASSAVAMAAPGNSATRTPPRAPGSRGSPLTSPTNCSHGSLSSSRMWAWSAD
GLSTFPPPSSSLPPPPAAVSSLRVLRRACSPSTMEYDSENLNSEEIYSSLRGVTEAIQNY
SFRSQEDLMEPLRRDAGGAVPFESDPRTGGDTVEGGRTALDNKTSLLNTPSARSFTGPRF
RDYNPCNYTDGPGSLDKTALYEDGVDPRRDARRQECVENKILNPKSFPACPTEQLELVGQ
LLKELSQGQGGEKGPEERRGTLLELLKVAREDSLMVWDEHFKTMLLLLLETLGDKDHTIR
ALALRVLKEILRNQPARFKNYAELTIMKTLEAHKDSHKEVVRAAEEAASTLAGSIHPEQC
IKVLCPIVQTADYPINLAAIKMQTRAIERISKEPLHQLLPDIIPGLLQGYDNTESSVRKA
SVFCLVAIYSVIGEELKPYLAQLTGSKMKLLNLYIKRAQTSTSNSSSSSDISSY
NT seq
4845 nt
NT seq
+upstream
nt +downstream
nt
atggaggaccagggaccggtgagcatggactaccttctggagcaggtgatgcacaaggac
ctgggcaggaggctgcaggtgggccaggagatcgccgagctgctgatgagcgaggacagg
tgcccggacctggaccaggaccaggcggcgctggaccggctggtggactccgtggccagc
tcctgggtgaactccagcaactttaaggtggttctgctggggatggacatcctctctgct
ctggtcggcagactgcaggagaggttcaggactcaggtgggaacagttctgccgagcctc
atagaccgactgggagactccaaggatcaggttcgagagcaagaccaggctctgctcctg
aagatcatggaccaagcggccaacccgcagtacgtttgggagaggatgatgggaggcttc
aagcacaagaacaaccgaaccagggaaggactctgcctgtgcctcatctccactttgaat
gtgtttggatctcagagtttgactcttagtaaaatcgtccctcacatctgtaacctccta
ggagaccctaccagtcaggtgcgcgacggagccatgaactgtctggtggagatttaccgc
cacgtcggggagcgagtaaggatggacctgggaaagaagggcctgccgcagtcacgactg
aacatgatcttcagtaaattcgatgaagtgcagtgctcgggaaacatggtgctgtccccc
atgtcagacaaaaacttcgaggacgatgactcggtggacgggggccgctcctcatcctcg
tccaaggccacctcgctgtcggggaggaaggtggtgagcatgggctcgttccgccggccc
gcctcgggcaacaagtccgcaggcagggacggatctgctgctggagctgttgacgaggac
gacttcatccaggcttttgaggatgttccctccatacaggtctactccaacagggaggtg
gaggaagcgctgacgaagatccgagacgtgctttccgatgacaagcgggactgggagctc
agagtggcggctctaaagaagctgcgttcgctgctcctggccggcgccgccgagttcgac
gggtttttgcagcagttacggctgatggaggcggcgttcaagctgtcggccaaagacctg
aggtcgcaggtggtgagggaggcctgcatcactctgggtcacctgtcttcagttctcggc
ggacgcttcgaccacgcggccgaggccatcatgcccaccctccttaacctggttcccaac
agtgccaaagtcatggccacgtccggcgtggccgtaatccgcctcatcctccgacacacg
cacttcccccgtctcatccccatcatcaccagcaactgtacttccaaatctgtggctgtg
aggaggcgctgcttcgagtttgtggacctgctgctgcacgagtggcagacgagcagcttg
gagagacacgtgacggttctcatggaaaccatcaagaaagggatccacgatgccgacgca
gaagctcgctctgtggccaggaagtgttactggggttttcacgcccacttcagcagggag
gcggagcagctgttccaggctctggagtcgtcctatcagaaagctctgcaggctcacctg
aggagcggagacagcctgatgtctctgccggcttctgaccgctcctcctcctcgtctcag
gagagcctcaatcgccccctgtctgtgaagaacagcgttggaagcagcagatccaaagcc
gtcccctccaccaggaagcccgccgtggccacgtctccgggctcgctccaccgctctcgc
agcgacgtggacgtcaacgccgcggcctccgccaacgcccgcaccaggatgagcgccgtc
tcctcggccgtgccgtcgtcccccttcagctcggcctcggcgcttcctcctggatcgtac
gcttcgcttgacgcttcgcggtctgttcacacagacggtcgagtccgaacgaggaggacg
agctccggaaacggccctacggtgacggacagccgcggccgcagccgggggaaggtcgtc
tctcagtctcagcccggcagccgatccggttctccggggagactcctcacctccacctac
ggcagaattcccaggcccaccatgggcgccccctccccccaaacccccaccagcagcagc
tacagtgacaaaaaccgtcctcgaggtcaccggagtcagggatgcagccgggacagtagc
cccaccagaacgggcgcagcccggagtcgcatccctcgccccagcatgagtcagggctgc
agccgcgaaaccagtcgcgagagcagccgcgacaccagccccgccaggggtttctccccc
ctggtgagccgccgccactcccgctccaccagcgcgctgtcctccgcagagagctgctca
gaccggctgtcccatcaggctcggatctccgcctccgtcaacgcgatgaggatcctgaac
accggcacggaggtggaggccgccgtcgctgacgctctgctcctaggagactccaggagt
aagaggcgcccggcgcggcggcgcttcgagtcccccggcatgtactcggacgacgacgcc
aacagcgacgcctccagcgcctgctcggagcgctcttacagctcgcgcaacggcggcgcg
acgccgcactacatgcggcagatggaggacgtggccgaggtgctgaaccactgcgccagc
gccaactggtccgagaggaaggagggcctgctgggcctgcagaacctgctcaagagccag
aggatgctcagccgcgtggagctgaagcgcctgtgcgagatcttcaccaggatgtttgca
gaccctcacagcaagagagtcttcagcatgttcctggagacgctggtggacttcatcgtc
ctgcaccgggacgacctgcaggactggctcttcgtcctgctcacccagctgttgaagaag
atgggggccgacctgctggggtcggtccaggctaaagtccagaaggcgctggacatcacc
agagagtccttcccgtacgagcagcagttcaacatcctgatgcgcttcatcgtcgaccag
actcagacgcccaacctgaaggtcaaggtggccatcctgcgctacatcgaggccctggcc
cgccagatggacccggccgacttcgtcaactccagcgagacccgcctcgccgtgtcccgc
atcatcacctggaccaccgagcccaagagctccgacgttcgtaagaccctgcaaagctgg
gctggcgaggagccggcaggccgagccggcacggtggcctccctacccggggagggcaac
ctggaggagaggtgcaagcaggcggcgcaggtggtgctgatcgcgctctttgagctcaac
acccccgagttcaccatgctgctcggcgccttgcccaaaaccttccaggacggcaccacc
aagctgctgcacaaccacctgaggagcgctagcagcgccgttgccatggcggcgcccggg
aactcggccacccgcacacctcctcgcgctccgggaagccgtggcagtccgctcacctcg
cccactaactgctcccacgggagtctctcctccagtcgcatgtgggcctggagtgcagac
gggctctctacctttcctcccccctcctcctctctgccccctccccctgctgctgtctct
tcccttagggtcctgcggcgagcctgctctcccagcacaatggagtacgacagtgagaac
ctgaactccgaggagatctacagttcgctgcgcggcgtcactgaggcgatccagaactac
agctttcgcagccaggaggacctaatggagccgctgcgccgtgacgccggaggcgcggtg
ccctttgagtcggaccctcgcaccggtggagacacagtggaaggggggcgaacggctttg
gacaacaagacgtccttgctcaacacgccctcggctcggtccttcacggggcctcgcttc
agggactacaacccctgcaactacacggacggccccggctcgctggacaaaactgctctg
tacgaggacggcgtggacccgcggcgggacgcacgccgtcaggagtgcgtggagaacaag
atcctgaaccccaaaagcttccctgcctgtcccacagagcagctggaactggttggacag
ctgttgaaggagctgtcgcagggccagggcggggagaagggccccgaggagaggcggggg
acgctgctggagctgctgaaggtggcgcgggaggacagcttgatggtgtgggacgagcac
ttcaagaccatgctgctgctgctcttggagacgctgggagacaaagaccacacgatccgg
gcgctggccctacgagtcctgaaagagatcctgaggaaccagccggctcgcttcaagaac
tacgccgagttgaccatcatgaagacgctggaggctcacaaagactcgcacaaggaggtg
gtacgggcggccgaggaggcagcttccacgttggcgggctccatccacccggagcagtgc
atcaaggtcctttgccccattgtgcagacggcagactatcccatcaacctggctgctatc
aagatgcagaccagagccatcgagcgcatcagcaaggagccgttgcatcagctgctgccg
gacatcatcccgggcctgctgcagggttacgacaacacagagagcagcgtgaggaaagcc
agcgtcttctgcctggtggccatctactccgtgatcggagaggagctcaaaccgtacctg
gctcagctcaccggcagcaagatgaagctcctcaacctttacatcaagcgggcgcagacc
tccaccagcaacagcagcagctcttccgacatctcctcctactga
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integrated database retrieval system
