Oryzias melastigma (Indian medaka): 112156969
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Entry
112156969 CDS
T07439
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112156969
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oml03041
]
112156969
03009 Ribosome biogenesis [BR:
oml03009
]
112156969
Enzymes [BR:
oml01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
112156969
Spliceosome [BR:
oml03041
]
Complex A
U1 snRNP components
U1 related factors
112156969
Complex B
112156969
Ribosome biogenesis [BR:
oml03009
]
Eukaryotic type
Pre-60S particles
Helicases
112156969
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
ERCC3_RAD25_C
BNIP2
Motif
Other DBs
NCBI-GeneID:
112156969
NCBI-ProteinID:
XP_024145114
Ensembl:
ENSOMEG00000008956
LinkDB
All DBs
Position
LG1:30190980..30200703
Genome browser
AA seq
630 aa
AA seq
DB search
MPGFADRDRGRDRGYGGPPRFGGGGGGGGGNRGGPPGKFGNPGERLRKKHWNLDELPKFQ
KNFYQEHPDVTHRPIQEVEQYRRSKEVTVKGRDCPKPIIKFNEAAFPSYVMDMIVKQNFT
EPTPIQSQGWPVALSGKDMVGIAQTGSGKTLAYLLPAIVHIQHQPFLEHGDGPICLVLAP
TRELAQQVQQVAAEYGRASRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECG
KTNLRRCTYLVLDEADRMLDMGFEPQIRKIVEQIRPDRQTLMWSATWPKEVRQLAEDFLK
DYVQINIGALQLSANHNILQIVDVCNDMEKEDKLIRLLEEIMSEKENKTIIFVETKRRCD
ELTRRMRRDGWPAMGIHGDKSQQERDWVLNEFRYGKAPILIATDVASRGLDVEDVKFVIN
YDYPNSSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQAGDLISVLREANQAINPKLIQMA
EDRGGRGRGGRGGYKDDRRDRYGGGRGNFGGSGYRDNDRGFGSGPKTAFGGSKAQNSGNY
VGNSGNSGGNYGNNYNSNGQGNFGPPNQGGFGNQSFQGPPQFGGMQRPAQNGMNHAPFPF
NSQPPPPPQNQQPPPPPPMVPYPMPPPFPQ
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atgcccgggtttgcagacagagaccgcggtagagaccgagggtatggtggaccccctcgt
tttggaggtggtggtggaggtggcggaggcaacaggggtggacctcctggaaagtttggg
aaccctggcgagaggctgagaaagaagcactggaaccttgacgagcttccaaagtttcag
aagaatttctaccaggaacaccctgatgtcacgcacagaccaatccaagaggttgaacaa
tacagaagaagcaaagaagttacagtcaaaggccgggattgccccaaaccaatcatcaaa
ttcaatgaagctgcatttccaagctacgtcatggatatgattgtgaagcagaattttacc
gagccaactccgatccagtctcaggggtggcctgtggctctcagtgggaaagacatggtt
ggaatcgctcagaccgggtcagggaaaacccttgcatacctgctgcctgccatagtccat
attcagcatcagcctttcttggagcacggagatggacctatttgtttggttctggcaccg
acccgcgagttggctcagcaggtgcaacaggtggcagccgagtacggcagagcgtctcgc
ctcaagagcacctgcatctacggcggtgcacccaaggggccgcaaatcagggaccttgag
aggggtgttgagatttgcatcgccaccccgggtcgcctcattgacttcctagagtgcggg
aaaacaaacttgcgtcgctgcacctacctggtgctggatgaagccgaccgcatgctggat
atgggatttgagcctcagatccgcaagatagtggaacagattcggccggatcgtcagacg
ctgatgtggagcgccacctggcccaaagaggttcgtcagctggctgaggacttcctgaaa
gactacgttcagatcaacattggagcgctgcagctcagcgctaaccacaacatcctgcag
atcgttgatgtttgcaacgacatggagaaagaggacaagcttatccgtttgctggaggaa
ataatgagtgaaaaggagaacaagaccattatttttgtggagaccaaaagacgttgtgat
gagctcaccaggaggatgagaagagacgggtggcctgcaatgggaattcatggggacaag
agccaacaggagagggactgggtccttaatgaattccgatatggcaaagctcccattctc
atcgccacagatgtggcctctcgtggtttagatgtggaggatgtgaaatttgtcatcaat
tatgactaccctaactcctccgaggattatatccaccgcattggacgcacagcccgaagt
caaaaaacgggcacggcctacaccttttttacccccaacaacatgaaacaagccggcgac
ctgatctctgtgctccgcgaggccaaccaggccattaatcccaagctgatccagatggca
gaggacagaggaggccgtggacgggggggaagaggtggctacaaggatgaccgtcgggat
aggtatggaggtggcaggggtaactttggtggtagtggttacagggacaatgacagaggg
tttggtagtgggcccaaaactgcctttggtggcagtaaggctcaaaatagtggcaactac
gtaggaaacagcggtaactctggtggtaactatggcaacaattacaacagcaacggacag
ggtaactttggacccccaaaccagggtggctttgggaaccaaagcttccaaggccctccc
cagttcggcggcatgcagagacctgctcagaatggcatgaaccacgcgccattcccgttc
aactctcagccgccgccgccgccacagaaccagcagccaccacccccaccaccgatggtt
ccctaccctatgccaccaccattccctcagtag
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