Oryzias melastigma (Indian medaka): 112157125 Help Entry 112157125         CDS       T07439                                  Symbol rfc1 Name (RefSeq) replication factor C subunit 1   KO K10754   replication factor C subunit 1 Organism oml  Oryzias melastigma (Indian medaka) Pathway oml03030   DNA replication oml03410   Base excision repair oml03420   Nucleotide excision repair oml03430   Mismatch repair Brite KEGG Orthology (KO) [BR:oml00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     112157125 (rfc1)    03410 Base excision repair     112157125 (rfc1)    03420 Nucleotide excision repair     112157125 (rfc1)    03430 Mismatch repair     112157125 (rfc1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:oml03032]     112157125 (rfc1)    03400 DNA repair and recombination proteins [BR:oml03400]     112157125 (rfc1) DNA replication proteins [BR:oml03032]  Eukaryotic type   DNA Replication Elongation Factors    RFC (replication factor C)     112157125 (rfc1) DNA repair and recombination proteins [BR:oml03400]  Eukaryotic type   SSBR (single strand breaks repair)    MMR (mismatch excision repair)     RFC (replication factor C)      112157125 (rfc1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  RFC1 BRCT AAA PTCB-BRCT AAA_22 AAA_30 AAA_5 RuvB_N AAA_14 Rad17 AAA_17 AAA_7 nSTAND3 BRCT_2 AAA_33 RNA_helicase AAA_18 NTPase_1 AAA_16 AAA_19 TIP49 NPHP3_N Motif Other DBs NCBI-GeneID:  112157125 NCBI-ProteinID:  XP_024145454 LinkDB All DBs Position LG1:20187572..20196642 Genome browser AA seq 1146 aa AA seqDB search MDIRLFFGPTSAKPAVQKPAPSTKPEEKKKKNNSSDVKSPKVKTSKTEEKRKISEKKRKK HSVIASDSEEEEKPTTKSKKSSKSSKVEPLPKKDPVQYVSETDSDSDNFQSLKKGPKPKH NGSSKGIKADAESSRLGPKASPVTEKPGLKSPTTPKSSAPPPPKKTPTSVADFFGSAAIH RSDKKLVASAKRKAPTQDHDDLISDEEIARQLQMEEDMELEKQVHEDEEFAKTLALLDSE PQAKKARKNADEKKKTTPKKSAGDAAGEASGVTKVRRSTSEDVISPSPRKVQAPVKTSSK LATMKRKDEAKEEGPRSKTVSSPSKMKISPKKEPLGSSTTPKAGTTPTALKTSPKKPEST STSPDDSEKKKAHTLAFRNFLNRDGPRALGSKEIPKGAENCLEGCVFVLTGVLESMERDD AKSLIERYGGKVTGNISKKTTYLVQGRDSGVSKLEKAESLGTQILDEDGLLELIRTKPGK KSVYEIAAEAECKATKTKTPPGKALKNTPKTQKISPSKGNSRSPHTPSPSKTGQAQRISE GSTPPGRGSAHTARRELGLSSSSSPKESSPSVTGDAPSLLWVDKYRPRSLKAVIGQQGEQ SCANKLLRWLQNWYKNHSGGAAKPAAAKFSKFGKDDGSTYKAALLSGPPGVGKTTTAALV CEELGFSYVEMNASSTRSKNSLKEVVSESLNNTSIENFYKGTSQTVSSKHVLIMDEVDGM AGNEDRGGMQELIGLIKTSKIPIICMCNDRNHQKIRSLSNYCFDLRFQRPRVEQIKGAMM SIAYKEGVKIPPPALNEIILASNQDVRQVIHNLSMWSAKDKVMTYDQCKSDAAKARKDMK MGPFDVCRKVFTCGEETAHMSLIDKSDLFFHDYSLAPLFVQENYVNVRPAAAGGDMKSHL VLLSKTADSISDGDLVDRRIRSGQNWSLLPTQAVYASVLPGELMRGYMTHFPVFPSWLGK NSSTSKHSRIIQELSSHMSLKTMGSRQAVNLDYLPFLRLALLAPLQRLGAEGAGQAVKLL DDYQLVKDDVDSIMEVSVWGGRPDPFAKLDSKVKAAFTRAYNKEVHLTPYSLQTVKKSRR GGGGETELGGEEIDQDGQESEDEGEGLKTDAMIKQKKRKTTKEPKNEKEDSGKGKGKGKG KGKAKK NT seq 3441 nt NT seq  +upstreamnt  +downstreamnt atggatataagactgttctttggaccgacatctgcaaaacctgcagtgcagaaaccagca ccaagcaccaaaccagaggagaagaaaaagaagaacaactcctctgatgtgaaaagcccc aaggtgaaaacctccaaaacagaagagaaacgcaagatcagtgagaaaaagcgcaaaaag cattcagtcatagcatcagattcggaggaagaagaaaaacccacaacaaagtctaagaag tcttccaaaagcagcaaagtggagcctcttcccaaaaaagatccggtgcagtacgtctct gaaacagactcagacagcgacaactttcagtcactgaagaaaggacccaaacccaaacac aacggttcttctaaaggtattaaagcggacgcagaaagttctcgcttgggacccaaagcg tctcctgtcacagaaaaacctggacttaagagtcccacgacccctaagtcttctgcacca cctccacccaaaaaaactcctacctcagtggcggatttttttggcagtgcggcgattcat cgctcggacaagaagctggtagccagcgcaaaaagaaaagctccaacacaagaccacgac gatctgataagcgatgaggaaatcgcccgacagctgcagatggaggaagacatggagctg gaaaaacaagtccatgaggatgaggagtttgcaaagacgctcgccttgctggactcagag ccgcaggctaagaaggctcgtaaaaacgcagatgaaaagaaaaagacaactcccaaaaag agtgctggtgatgctgctggagaggccagcggcgtgacgaaggtcaggcgaagcacgtcg gaggacgtgatcagtccgtcgcccaggaaggtacaagctccggtcaaaaccagttctaaa ctcgccacgatgaagaggaaggatgaggcaaaggaggaaggaccaaggagcaaaacagtc agttctccatcgaaaatgaaaatctcgcctaagaaggagccgcttggttcttcaactaca cccaaagctggaaccacgcccacagcactcaagacgtctccaaagaaaccagagagcacg agtacgagtcctgacgactctgagaagaagaaggcccacactctggctttcaggaatttc ctcaacagagacggacctcgagctctggggtcaaaggaaatcccaaagggagcagaaaac tgtctggagggctgcgtgttcgtcctgacgggagtcctagaatccatggaaagagacgac gccaaatctctcattgagcgctatggaggcaaggtgacgggcaacatcagcaagaaaacc acgtacctggtgcagggcagggacagcggcgtgtccaagctggagaaggcggagagtcta gggacccagattctggatgaggatggtctgttggagctgatccgaaccaaaccaggaaag aagtctgtgtatgagatcgcagcagaggcagagtgcaaagccacaaagaccaagaccccc cctggcaaggccttaaagaacacccccaaaactcagaagatctccccctctaaaggtaac tccaggtctcctcacaccccgagcccatcaaagacgggtcaggctcagaggatcagtgaa ggcagcaccccaccgggcagaggctctgctcacacggcccgcagagagctcggtctgtcc tcctcctcgtctccaaaagaatcgtcaccttcagtgacaggggatgctcccagccttctg tgggtggacaaataccggccacgctctttgaaggctgtgattggccagcagggggagcag agctgtgccaacaagctgctgcgctggctacagaactggtacaaaaaccacagcggtgga gctgcaaaacctgcagctgcaaagttcagcaaatttggcaaagacgatggctcaacttac aaagccgcgctgctctccggtcctccgggggtggggaagaccaccacagctgccttggtc tgtgaggagttgggcttcagctacgtggagatgaacgccagctccacccgcagcaaaaac agcctgaaggaggtggtgtccgagtcactcaacaacaccagcattgagaacttttacaaa ggaacctctcagacggtgagcagcaaacacgtcctcatcatggatgaggtcgacggcatg gccggtaacgaggaccgtggaggaatgcaggagttaatcggtctgataaagacttcaaag attcccatcatctgcatgtgcaacgaccggaaccaccaaaagatcagatctctgtccaac tactgctttgacctgcgcttccagaggccgcgagtggagcagatcaagggcgccatgatg tcgatcgcttacaaggagggggttaagatcccacccccagctctgaatgaaattatttta gcctccaatcaggatgtccgacaggtgattcataacctgagcatgtggtcagccaaagac aaagtcatgacgtatgaccagtgcaagtctgacgcggccaaagcccgcaaggacatgaag atggggcccttcgacgtctgcaggaaggttttcacctgcggcgaggaaacggcacacatg agcctcatcgacaagtctgatctctttttccacgattactcgctggcgccgctttttgtt caggagaactacgtgaacgtccgtcccgctgcagctggcggcgacatgaagtctcacctg gtgctgctcagcaagacggcagactccatctctgatggggatctggtggaccgaaggatc cgctcggggcaaaactggtcactgctgcccacacaggccgtctacgccagtgtgttacca ggcgagctaatgcggggctacatgactcacttcccggtctttcctagctggctcggcaaa aactcctccaccagcaaacattctcgcatcatacaggagctcagctctcacatgagttta aaaaccatgggcagcaggcaggcggtgaacctggattatctgcccttcctgcgcctggcg ctgctggctccacttcagagactcggagccgagggcgccggtcaagccgtaaagctgctg gatgactaccagctggtcaaggacgacgtggacagcatcatggaggtcagcgtctgggga gggagacccgatcccttcgccaagctggactccaaggtgaaggcagcgttcacgcgggcg tacaacaaggaggttcacctgacgccgtactctctgcaaactgtgaagaagagccggcgt ggcggcggcggggaaacagaattgggaggagaagaaattgatcaagacggtcaagagtct gaagacgaaggcgagggtctcaagacagatgccatgatcaaacaaaagaagagaaaaacc actaaggagcccaaaaatgagaaggaagattctggaaaaggcaaaggcaagggcaaaggc aaaggaaaggctaagaaatga

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