Oryzias melastigma (Indian medaka): 112157136
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Entry
112157136 CDS
T07439
Symbol
upf2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03013
Nucleocytoplasmic transport
oml03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112157136 (upf2)
03015 mRNA surveillance pathway
112157136 (upf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oml03019
]
112157136 (upf2)
Messenger RNA biogenesis [BR:
oml03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
112157136 (upf2)
mRNA cycle factors
P-body specific factors
112157136 (upf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
112157136
NCBI-ProteinID:
XP_024145480
Ensembl:
ENSOMEG00000023420
LinkDB
All DBs
Position
LG23:21227580..21256251
Genome browser
AA seq
1302 aa
AA seq
DB search
MPAENKHSVNMEEKEPGTFSSKEKDKEGEKRTTFTRDRSKDEAKMSGKKDFSKEDKRKRM
EEEKKKKEEKERKKKEEEKQKAEEEQKKREEEEKKQQEEQERKLQEEEAKRQREEEAALV
KEKEEGHQLHQEAWERHQCRKELRSKNQNAHECRPEEAFFSRLDSSLKKNTAFVKKLRTL
TEQQRDALSNDFASLNLSKYIGEAVSSVVEAKLKISDVGCAVHLCSLFHQRYADFAPLLL
LAWKKHFEARKEDKAPNVSKLRTDLRFIAELTIVGLFTDKEGLSLIYEQLKNIIGTDRET
HTHVSVVISFCKHCGDDIAGLVPRKVKLAAEKFGLSFPPSEIISVEKQQPFQNLLREYFT
SLTKHLKKDHRELQNIERQNRRILHSKGELSEDRHKQYEEFATSYQKLLANTQSLADLLD
ENMPELPQDKTVQEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENLVDLKAFVPAI
LFKDNEKISQGKDKDEAKDGRDGKEAASTTEELELELEALDIADEPLELEAAEEAESEEL
AKKILDEQEQEDEEASTGSHLKLIVDAFIQQLPNCVNRDLIDKAAMDFCMNMNTKANRRK
LVRALFTVPRQRLDLLPFYSRLVATLHPCMSDVAEDLCSMLKGDFRFHIRKKDQINIETK
NKTVRFIGELAKFKMFSKTDTLHCLKMLLSDFTHHHIEMACTLLETCGRFLFRSPDSHLR
TSVLLEQMMRKKQAQHLDARYVTMVENAYYYCNPPPIEKTVKKKRPPLQEYIRKLLYKDL
SKVTTEKVLRQMRKLPWQDPDVKSYLICCMVNIWNVKYNSIHCVANLLAGLVAYQEDVGI
HVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLFSFISFGVNP
DGGASPLDPPEHLFRIRLVCTLLDTCGQYFDRGSSKKKLDCFLIYFQRYIWWKKSADVWT
KDHPFPIDIDYMISDTMELLRPKMRLSSSLEDATRQVVDLEREVLVKLGLAAEKDGRSSA
MSEGEGLDEEDDEDEEEGGAETEEQSGNESEMNEQEEDEGSENEEEEREEEEEENTDYLT
DSNKENETDEENNEVTIRGGGLKHVACAEDEDFIQALDKMMLENLQQRSGEAVKVHQLDV
AIPLQLKSQLKKGGSGQQCIMEGDSEGSDTMQFVMLTRKGNKQQYKILNVPLSSHLAANH
FNQQQAEQEERMRMKKLTLDINERQEQEDYQEMMQSLAQRPAQANTNRDRRPRYQHPKGA
PNADLIFKTGGRAKRERDKKDENQGRQRQTDRKVKQLKLLMD
NT seq
3909 nt
NT seq
+upstream
nt +downstream
nt
atgcctgctgaaaacaaacactctgtaaacatggaggaaaaagaacccggcaccttcagc
agtaaagagaaggacaaagaaggagagaaaaggacgacgtttactcgagaccgatcgaag
gacgaggccaagatgagtggcaagaaggactttagcaaggaggacaagaggaagcgcatg
gaggaggagaagaagaagaaagaggagaaggagcgcaagaagaaagaggaggaaaaacaa
aaagcagaggaggagcagaagaagcgagaggaggaggagaagaaacagcaggaggagcag
gagcgaaagctccaggaggaggaggccaaacggcagcgtgaggaggaggcggctcttgtg
aaggaaaaggaggaggggcatcagctgcaccaggaggcctgggagcgccaccagtgcagg
aaggagctccgcagcaagaaccagaacgctcacgagtgccggcccgaagaggccttcttc
agccgtctggactccagcctgaagaagaacacggccttcgtgaagaagctgcgcacgctc
accgagcagcagcgcgacgcgctctccaacgacttcgcctcgctcaacctcagcaagtac
atcggcgaggccgtgagctcggtggtggaggccaagctgaagatctccgacgtgggctgc
gccgtgcacctgtgctcgctcttccaccagcgctacgccgacttcgcgccgctgctgctg
ctggcgtggaagaagcacttcgaagcccggaaggaggacaaggcgcccaatgtgagcaag
ctgcgcacggacctgcgcttcatcgccgagctcaccatcgtcggcctcttcaccgacaag
gaggggctgtcactcatctacgagcagctgaagaacatcatcgggaccgaccgcgagacg
cacacgcacgtgtccgtggtcatcagcttctgtaagcactgcggggacgacatcgccggt
ctggttccacgcaaggtcaagctggcggctgagaagtttggcttgagcttcccgccgagt
gagatcatcagcgtggagaagcagcagcccttccagaaccttctgcgagaatacttcacg
tccctcaccaagcacctgaagaaggaccaccgagagctgcagaacatcgagaggcagaac
aggcgcatcctgcattccaaaggggagctgagcgaggaccggcataagcagtacgaggag
ttcgccacctcctaccagaagcttctggccaacactcagtctctggctgacctgctggat
gagaacatgccagaacttccccaggacaaaaccgtgcaggaggaacacggacccggcatc
gacatcttcaccccggggaagcccggagaatacgacctggagggaggaatctgggaggat
gaagatgctcgtaacttctacgagaacctggtggacctgaaggccttcgttcccgccatc
ctcttcaaggacaacgagaagatcagccaaggaaaagacaaggacgaagccaaagacggc
agagacgggaaggaggcggcgagcaccactgaggagctggagctggagctggaggccctg
gacatcgcagacgagcctctggagctggaggcggcggaggaggcggagagcgaggagctg
gcgaagaagatactggatgaacaggaacaagaagacgaggaggcgagcaccggctcccac
ctgaagctgatcgtggacgccttcatccagcagcttcccaactgcgtcaacagagacctg
atagacaaggccgccatggacttctgcatgaacatgaacaccaaagccaaccgcaggaag
ctggtccgagcgctcttcaccgtgccccggcagaggttggacctgctgccgttttactct
cgcctggtcgcaactctgcacccctgcatgtctgacgtggctgaagacctgtgctccatg
ctgaagggagacttccgcttccacattcgtaagaaggaccaaatcaacatcgaaaccaag
aacaaaaccgtcaggttcatcggggagctggccaagttcaagatgttctccaaaaccgac
acgctgcactgtctgaagatgctgctgtccgacttcacccatcaccacatagagatggcg
tgcacgctgctggagacctgcggccgcttcctgttccgctcgccggactcccacctgcgc
accagcgtcctgctggagcaaatgatgcgcaagaagcaggcgcagcacctggacgcgcgc
tacgtcaccatggtggagaacgcctactactactgcaaccccccgcccatcgagaagacg
gtgaagaagaagaggccgccgctgcaggagtacatccgcaagctgctctacaaggacctg
agcaaggtcaccacggagaaggtgctgcggcagatgcgcaagctgccctggcaggacccc
gacgtgaagagctacctgatctgctgcatggtcaacatctggaacgtcaagtacaacagc
atccactgcgtggccaacctgctggccggcctggtggcctaccaggaggacgtgggcatc
cacgtggtggacggcgtgctggaggacatccggctgggcatggaggtcaatcagcccaag
tttaaccagcggcgcatcagcagcgccaagttcctgggcgagctctacaactaccgcatg
gtggagtcggccgtcatcttccgcacgctcttctccttcatctccttcggggtgaacccg
gacggcggcgccagccccctggaccccccggagcacctgttccgcatccggctggtctgc
accctgctggacacctgcggtcagtacttcgaccgcggctccagcaagaagaagctcgac
tgtttcctcatctacttccagcgctacatctggtggaagaagagcgccgacgtttggacc
aaggaccacccgttccccatcgacatcgactacatgatcagcgacacgatggagctgctg
cggcccaagatgaggctcagcagctccctggaggacgccacccggcaggtcgtcgacctg
gagagggaggtgctcgtcaaactgggtttggcggcagagaaggacggccgctccagcgcc
atgagcgagggcgagggtctggacgaggaggacgacgaggacgaggaggagggcggcgcc
gagacggaggaacagtcgggcaacgagagcgaaatgaacgagcaggaggaagacgaagga
tcagaaaacgaggaggaggagcgggaggaggaggaagaggagaacacagactacctgacg
gactccaataaagaaaacgagacggacgaggagaacaatgaagtgaccatccgcggcggc
gggctgaagcacgtggcgtgcgctgaggatgaggacttcattcaggctctggataagatg
atgctggagaacctgcagcagcgcagcggcgaggcggtgaaggtgcaccagctggacgtg
gccatcccgctgcagctgaagagtcagctgaagaagggcggatccggacagcagtgcatc
atggagggagactcggagggctcagacaccatgcagttcgtcatgctgacccgcaaaggg
aacaagcagcagtataagatcctgaacgttcctctgtcgtcccacctggcggcgaaccac
ttcaaccagcagcaggcggagcaggaggagcgcatgaggatgaagaagctcacgctggac
atcaacgagaggcaggagcaggaggactaccaggagatgatgcagtccctggcccagcgt
ccggctcaagccaacaccaaccgggaccgccggccccgataccagcaccctaaaggtgct
cccaacgccgacctcatcttcaagacgggaggaagagcgaaaagggagagagataaaaag
gatgagaaccagggcaggcagagacagacagacaggaaagtgaagcagctgaagcttctc
atggactag
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integrated database retrieval system
