KEGG   Oryzias melastigma (Indian medaka): 112157139
Entry
112157139         CDS       T07439                                 
Symbol
smu1b
Name
(RefSeq) WD40 repeat-containing protein SMU1
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
oml  Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:oml00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:oml03041]
    112157139 (smu1b)
Spliceosome [BR:oml03041]
 Complex B
  Other components
   Complex B specific factors
    112157139 (smu1b)
SSDB
Motif
Pfam: WD40 WD40_WDHD1_1st WD40_Prp19 Beta-prop_EML_2 WD40_CDC20-Fz Beta-prop_TEP1_2nd WDR55 WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_CAF1B_HIR1 EIF3I ANAPC4_WD40 Beta-prop_WDR90_POC16_2nd Beta-prop_HPS5 Beta-prop_WDR75_1st WDR90_beta-prop_4th LisH_TPL NBCH_WD40 Beta-prop_RIG_2nd WD40_MABP1-WDR62_1st Beta-prop_TEP1_C Beta-prop_IFT122_1st Beta-prop_Nup120_160 Beta-prop_NWD2_C Beta-prop_WDR19_1st Ge1_WD40 Beta-prop_Vps41 Beta-prop_IFT140_1st Beta-prop_NUP159_NUP214 Beta-prop_DCAF4 Beta-prop_SCAP Beta-prop_SPT8 Beta-prop_WDR75_2nd Beta-prop_VPS8 WD40_RFWD3 Beta-prop_WDR35_TULP_N Beta-prop_WDR11_2nd Beta-prop_IP5PC_F Beta-prop_LRRK2 Beta-prop_DCAF12 TFIIIC_delta Beta-prop_EIPR1 WD40_like VPS8_N Beta-prop_RSE1_1st LisH WD_LRWD1
Other DBs
NCBI-GeneID: 112157139
NCBI-ProteinID: XP_024145481
Ensembl: ENSOMEG00000007796
LinkDB
Position
LG1:17955685..17965179
AA seq 509 aa
MAVEMEPTDVIRLIMQYLKENNLYRTLSTLQEETTVSLNTVESFESFIADINRGHWDSVL
LAIESLKLPDNILTDLYEQVVMELIEMRELGAARALLRQTDPMIMLKQTQPERFSHLEKL
LTQPYFDPREAYPKGSSKEKRRRALAEALMREVCVVPPSRLIGLLEQVTYITRQQSPARI
SADMIVDSSGKKEQHVEKDSFPTQLYRHVKFGRRSHVRCARFSPDGRYLVTGSVDGFIEV
WNFNTGKISKDLKYQAQDSFMMMDDAVLCMCFSQDTDMLATGAQNGKIKVWKIQSGLCLR
RFEHAHNKGVTCLSFSKDSSQIFSGSFDQTLRIHELRSGKTLKELSGHSSFVNDAAFLRD
GSHIISASSDGSVKIWNTKSRECINHLSAKPGVPVNNVIPLPQNPEHFVVCSQSSTVAVM
NMLGQTVKTFTPDRPETTVKFVCCTASPRGEWIYCVGEDCVLYCFKYSTGRLEKTLTVHE
KDVIGVAHHPHENLLATYSEDGLLRLWKP
NT seq 1530 nt   +upstreamnt  +downstreamnt
atggctgtggagatggagcccacagatgtgatccgcctcataatgcagtacctgaaggag
aacaacctctaccgcactctcagcaccttgcaagaagaaaccaccgtctctctcaacaca
gtggaaagctttgagagcttcatcgcagacatcaacaggggtcactgggactccgtcttg
ctggccatcgagtccctcaagctgcctgacaacattctcaccgacctctacgagcaggtg
gtgatggagctgatagaaatgagagagctgggagccgctcgggctctcctcagacagacc
gatcccatgatcatgctgaagcagacccagcctgagaggttctcacacctggagaagctg
ctaactcagccttactttgaccctcgggaggcgtaccctaaaggcagcagcaaggagaag
cggcgcagagctttggctgaagctctcatgagggaggtctgcgtggtcccaccctcccgc
ctcatcggccttctggaacaagtcacttacataacacggcagcagagtccggcgcgtatc
tctgcggacatgatcgttgactcttcagggaagaaggagcagcatgtggagaaagacagc
tttccgacccagctgtacagacatgtaaagtttggacgccgctcacacgtgagatgtgcc
cgcttctcacctgacggacggtacttagtaacaggatcagtggatgggtttattgaggtc
tggaatttcaacacgggaaaaattagcaaggacctgaagtatcaggcccaggacagcttc
atgatgatggatgacgccgtgctttgcatgtgcttcagtcaggatacagacatgcttgcc
actggagctcagaacggcaaaataaaggtgtggaaaatccaaagtggactgtgcctgcgt
aggtttgagcacgctcacaacaaaggcgtgacttgtctgagcttctccaaggacagcagt
cagatcttcagcggttcctttgaccagaccctcagaattcatgaactgaggtccgggaag
acactaaaggaattaagcggccattcatcatttgtaaatgacgcagccttcctcagagat
ggatctcacatcatcagcgcttcatctgatggcagcgtgaagatttggaacacaaagtcc
cgtgaatgcattaatcatctgtcagcaaagccaggtgttcccgtgaacaatgtgattcct
ctgccccaaaatccagagcactttgtggtttgcagccagtccagcacagtggctgtcatg
aacatgctgggtcagactgtgaagaccttcactccagaccgaccagagacgacagtaaag
tttgtgtgttgcaccgcgtcaccccggggagagtggatctactgtgtaggcgaggactgt
gtgctgtactgcttcaagtactcaacaggaaggctggagaaaacgctgactgttcacgag
aaagatgtcatcggcgtcgctcaccacccacacgagaacctgctggccacctacagcgag
gacggcctgctgaggctatggaaaccttaa

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