Oryzias melastigma (Indian medaka): 112157245 Help Entry 112157245         CDS       T07439                                  Symbol patl1 Name (RefSeq) protein PAT1 homolog 1   KO K12617   DNA topoisomerase 2-associated protein PAT1 Organism oml  Oryzias melastigma (Indian medaka) Pathway oml03018   RNA degradation Brite KEGG Orthology (KO) [BR:oml00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    03018 RNA degradation     112157245 (patl1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:oml03019]     112157245 (patl1) Messenger RNA biogenesis [BR:oml03019]  Eukaryotic type   mRNA surveillance and transport factors    mRNA cycle factors     P-body specific factors      112157245 (patl1)   mRNA degradation factors    5'-3' decay     Decapping complex      112157245 (patl1) SSDB OrthologParalogGFIT Motif Pfam:  PAT1 CEP162_helical_1 Motif Other DBs NCBI-GeneID:  112157245 NCBI-ProteinID:  XP_024145654 LinkDB All DBs Position LG1:32497055..32505892 Genome browser AA seq 776 aa AA seqDB search MFRFQSLDDDCTLEEEDDGLVEEEDEIDQFNDDTFGAGAIDDDWQEEHKRLAELDERDGG AEPEEAEPGGAEPPSSSAGPPSLPSSLGFPSSSSDLPPRDADERAGGGELAESVARLILE ADPAIAGVGAAEKPRPPPSLHGLQQPRPPQQQLPPGAPAPLASSVLSYQQQQHLLHRGSA PTAQVNSHSIWDSSLGFGPVSVPPALVTHMEDSPLMSIIKEVGLPKRPLQGRTEEGWDLS ERVPPPRSSSPVIGSPPVRAVPIGTPPKQPMSHALNHQIHHPTAVHVRAPVQHRYPPPFP ERLSPNTLLNIANSPLCRGPFPPRVLSQIQRAQLLNSQVAGFPRGGPAPPLLPGGGFRPF FGGPPPPHGHRMGPPPPIPPVRHNTTHLHPQHRRLLTQRLQSRGGDRVRSAGDRRPRDPY SNLMSQKEKEWVTKIQMMQLQSTDPYLDDYYYQNYYEKMEKRQEKERDSSRKEHATKLIT PQVAKVEHTYRPVQFAGSLGKLTVSSVNNPRKMIDAVVTSRSDDEEKREKQVWNKRRQIL YTVEKMFSLLLEVQDFEKRFVHTPEEERPALLEQHKTNTEQLSAALRDKDWEHRVSDDLC VMIMSVRKGKRLMARLLPFLPAAQAAAVVMAIARNLPTLAKKDKQDQVLCCLLDPVSAVV QSLSSSALTDLLQELQGSEGQLTTVLQNKFGVTLLYLILSEGERMQSSDPVCQLMDDNRW TELVFSVMRELLGVSSSSLSPPLFTPPNLLSVFSRYVDRQRLELLQDKLQISVSSR NT seq 2331 nt NT seq  +upstreamnt  +downstreamnt atgtttcgatttcagtccctggatgacgactgtacgctggaggaggaagacgatggactg gtagaggaggaagatgaaatcgatcagttcaacgatgacacctttggagccggagccatc gatgacgactggcaggaggagcacaagcgtctggctgagctcgacgagcgtgacggaggg gcggagcctgaggaggcggagcctggaggagcagagcccccgtcctcctctgcaggtcct ccctccctcccgtcctccctgggctttccctcgtcttcctctgaccttcctcctcgagat gcagacgagcgagcgggaggcggcgagctggcagagtctgtggcccgcctcatcttggag gcggatcccgccatcgccggggtcggagcggcagagaagccccgcccccctcccagcctg cacgggctgcagcagccacgccccccccagcagcagctgccccccggagcgccagcgccg ctcgcctcgtctgtgctcagctaccagcagcagcagcacctgctgcaccgaggctccgcc cccacggcacaggtgaactctcacagcatctgggacagcagcctcggcttcgggccggtc agcgtcccccccgcgctggtcacgcacatggaggacagtccgctcatgtccatcatcaag gaggtggggcttcccaaacgacctctgcagggccggaccgaggaggggtgggacctctct gagcgggtcccgcccccacgctcctcctcccctgtgataggctcacctcctgtgagggcg gtgccaatagggactccgcccaagcagcctatgagccacgccctgaatcaccagatccac caccccacggcggttcacgtgcgcgccccggtccagcacagatacccccctccctttccc gagcgcctgtcacccaacaccctcctcaacatagctaactccccgctgtgccgcggcccg tttcccccccgggtcctgtcccagatccagagagcccagctgctgaactcccaggttgca ggtttcccccgtggcggccccgcccctccactgttgccgggcggaggtttccggccgttc tttggggggccccctcccccacacggtcaccggatgggcccgccccctcccatcccacct gtgcgacacaacaccacccacctgcacccgcagcaccgccgcctgctaacccagaggctg cagagccgtgggggggaccgagtcaggtctgcgggggatcggcgcccccgagacccctac agcaacctgatgagccagaaggagaaggagtgggtcaccaagatccagatgatgcagctg cagagcaccgacccctacctggacgactactactaccagaactattacgagaagatggag aagcgtcaggagaaggagcgggacagcagcaggaaggagcacgccaccaagctcatcacg ccgcaggtcgccaaggtggagcacacctacaggccagttcagtttgcaggttctctgggg aagctgacggtctccagcgtcaacaacccccgcaagatgatcgacgccgtggtgacgagc cgctcggacgacgaggagaagagggagaagcaggtgtggaacaagcggcggcagatcctg tacacggtggagaagatgttcagcctgctgctggaggtccaggacttcgagaagcgcttc gtgcacacccccgaggaggagcggccggcgctgctggagcagcacaagaccaacacggag cagctgagcgccgcgctgcgtgacaaggactgggagcacagagtgagcgatgacctgtgc gtgatgatcatgtctgtgaggaaagggaaacgcctcatggccagactcctccccttcctg cctgctgcacaggccgccgccgtcgtcatggcgatcgcccgtaacctccccaccttggcc aagaaggacaagcaagatcaggtgctgtgctgcctgttggatccggtttccgccgtggtt cagtcgctgtcaagctccgccctcaccgacctgctgcaggagctccagggcagcgagggt cagctgaccacggtgctgcagaacaagttcggcgtgacgctgctgtacctgatcctgagc gagggcgagcggatgcagagctccgaccccgtctgtcagctgatggacgacaatcgatgg actgagttggtgttctcggtgatgagggagctgctcggcgtctcctcgtcatcgctctcc cccccactcttcaccccccccaacctgctgtccgtcttctctcgatacgtggaccggcag aggctggagctgctgcaggacaagctgcaaatctctgtgtcatcgaggtag

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