Oryzias melastigma (Indian medaka): 112157250
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Entry
112157250 CDS
T07439
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112157250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oml03041
]
112157250
03009 Ribosome biogenesis [BR:
oml03009
]
112157250
Enzymes [BR:
oml01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112157250
Spliceosome [BR:
oml03041
]
Complex A
U2 snRNP components
U2 related factors
112157250
Complex B
112157250
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
112157250
Ribosome biogenesis [BR:
oml03009
]
Eukaryotic type
90S particles
Helicases
112157250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
AAA_25
SRP54
Flavi_DEAD
AAA_29
AAA_7
Atrophin-1
DUF3915
Motif
Other DBs
NCBI-GeneID:
112157250
NCBI-ProteinID:
XP_024145662
Ensembl:
ENSOMEG00000010067
LinkDB
All DBs
Position
LG1:complement(19391629..19402421)
Genome browser
AA seq
760 aa
AA seq
DB search
MSKRHRLDLGDDYSSSKKRSDGRDRDRDRDREDRSRDRDRDRDRDRDRDRDSKPSAAVSN
STTPVASVPTVKQMPMNQQINPFTNLPHTPRFYEILKKRLQLPVWEYKESFTNIITRQQS
FVLVGETGSGKTTQIPQWCVDMVRGLPGPKRAVACTQPRRVAAMSVAQRVADEMDVMLGQ
EVGYSIRFEDCSSAKTILKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILMGV
LKEVVRQRSDLKVIVMSATLDAGKFQVYFDNCPLLTIPGRTHPVEIFYTPEPERDYLEAA
IRTVIQIHMCEEEEGDCLLFLTGQEEIDEACKRIKREVDDLGPEVGDIKIIPLYSTLPPQ
QQQRIFEPPPPRKPNGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVES
LLVTAISKASAQQRAGRAGRTRPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQLK
KLGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAKMV
IASCEFNCSNEILSITAMLSVPQCFVRPTEAKKAADESKMRFAHIDGDHLTLLNVYHAFK
QNHESNQWCYDNFVNYRSLMSADNVRQQLSRIMDRFNLPRRSTEFTSRDYYINIRRALCT
GFFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDIKP
EWLVKIAPQYYDMSNFPQCEAKRQLERIIAKLESKEYSQY
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaaagacatcgcttggatttgggcgatgattactcttccagtaagaagaggtct
gacgggagggatcgagatcgggacagggaccgcgaggaccgctccagggacagggacaga
gatagagaccgggacagagaccgggatagagactccaagccctctgctgcagtctctaac
agtacgacacctgtagccagcgtacccactgtcaagcagatgcctatgaatcagcagatc
aaccctttcaccaacttaccacacacgccgcgtttctacgagatcttaaagaagaggtta
caacttccagtgtgggagtataaggagagcttcaccaacatcatcacacgtcaacaaagc
tttgtcctcgtaggagagacgggctctggaaaaaccacacagatccctcagtggtgtgtg
gacatggttcggggtttgcctggtcccaagcgagctgtagcctgtacccagccgaggaga
gtggctgccatgagcgtcgctcaaagagtggcagatgaaatggatgttatgcttggacaa
gaagtcggctattccatcagatttgaggattgtagctctgctaaaacgatactaaaatac
atgacagatggtatgttactgagagaagctatgaatgaccctctgctggagcgatacggc
gtgatcattctggacgaggcccacgagcgaactcttgctacagatatcctgatgggagtg
ctgaaagaagtggtccgtcaacgatctgacctgaaggtgattgtcatgagcgccactctg
gatgccgggaagttccaagtatactttgacaactgtcctctgttaacaattcctggacgc
acgcatcccgtagagatcttttatacccccgagccagaacgggactaccttgaggcggca
atccgcaccgtcattcagattcacatgtgcgaagaagaagagggcgactgtcttctgttt
ctcacaggccaagaggaaatagacgaggcctgcaagaggatcaagcgtgaggttgatgac
ctgggtcctgaagtcggggacatcaaaatcattccactgtattccacactgcctcctcag
cagcagcaaaggatctttgagccgcctcctccaaggaaacccaacggcgccattggcaga
aaggttgtggtgtcaacaaacatcgctgagacttctttaactattgatggtgtggttttt
gtaatcgatcccggatttgccaaacagaaggtgtacaatcctcggatcagagtggagtct
ttgctggtcactgccatcagtaaagcttctgcccagcagagggcgggtcgcgctggcaga
acacgtccagggaaatgtttccgtctctacacggagaaggcctacaaaacagagatgcag
gataacacataccctgagattcttcggtccaatctgggttcggtggtgctgcagctgaaa
aaactgggcattgatgaccttgttcattttgacttcatggatccaccagctcctgagacc
ctcatgagagctctggaactgctgaactacctggcggctctcaacgatgacggcgacctc
accgagctgggctccatgatggcggagtttcctctggaccctcagcttgcaaagatggtc
attgcgagctgcgagtttaactgctccaatgaaattctttccatcaccgccatgctgtca
gtcccacagtgctttgtccgtcctacggaggctaagaaggcagctgacgagtccaagatg
aggtttgctcacattgatggagaccacttgacgctgctcaacgtctaccatgccttcaaa
caaaaccatgagtctaaccagtggtgctatgacaactttgtcaactaccgctcactgatg
tctgctgacaacgtgcgtcagcagctgtcgaggatcatggaccgctttaacctgcccagg
cggagcacagagttcaccagcagagattactacatcaacatccggcgtgctctctgcact
ggcttcttcatgcaggtggcccatttggaacgcacaggccattacctcacagtcaaagat
aaccaggtggttcagctgcacccgtccactgtcctggaccacaagccagagtgggtgctc
tacaacgagtttgtcctcacgaccaagaactacatccgcacttgcacagacatcaaacca
gagtggctggtgaagattgcaccgcagtactacgatatgagcaactttccacaatgtgaa
gcgaagagacaactggagcgaattattgccaaattggagagcaaagagtattctcagtac
tga
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integrated database retrieval system