Oryzias melastigma (Indian medaka): 112157251
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Entry
112157251 CDS
T07439
Symbol
slit2
Name
(RefSeq) slit homolog 2 protein isoform X1
KO
K06839
slit 2
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
oml00536
]
112157251 (slit2)
Glycosaminoglycan binding proteins [BR:
oml00536
]
Heparan sulfate / Heparin
Axon guidance molecules
112157251 (slit2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
EGF
LRR_4
LRR_5
Laminin_G_2
Laminin_G_1
LRRNT
LRR_9
LRRCT
hEGF
LRR_1
EGF_TEN
LRR_14
EGF_DL_JAG
Laminin_G_3
EGF_3
LRR_EndoS
EGF_Teneurin
Motif
Other DBs
NCBI-GeneID:
112157251
NCBI-ProteinID:
XP_024145664
Ensembl:
ENSOMEG00000011616
LinkDB
All DBs
Position
LG1:19970941..20074609
Genome browser
AA seq
1568 aa
AA seq
DB search
MVGALRPAASSRSLATVSGLLVITILLSSGADAQPCPTQCSCTGTTVDCHGQGLRSVPRN
IPRNAERLDLNANNLTKITKADFAGLRHLRVLQLMENKITTIERGAFQDLKELERLRLNR
NNLAVFPELLFLGTTKLHRLDLSENQIQGVPRKAFRGAVEIKNLQLDYNHISCIEDGAFR
ALRDLEVLTLNNNNISRLSVASFNHMPKLRTFRLHSNNLQCDCHVAWLSEWLRQRPRLGL
YTQCMSPPHLRGHNVAEVQKKEFVCTDAFEGHQSSSSSSCSVLQCPESCTCSNNIVDCRG
KGLTEIPTNLPETITEIRLEQNAIKVIPAGAFSPYKRLRRIDLSNNQISELASDAFQGLR
SLNSLVLYGNKITEISKGLFEGLFSLQLLLLNANKIACLRVDAFQDLHNLNLLSLYDNKL
QTIAKGTFASLRAIQTLHLAQNPFICDCHLKWLADYLQDNPIETSGARCTSPRRLANKRI
GQIKSKKFRCSAREQYFIPGTEDYRSKLGGDCFADLACPEKCRCEGTTVDCSNQKLTKIP
DHIPQYTAELRLNNNEFTVLEATGIFKKLPHLRKINLSNNRITDIEEGTFEGASGVNELI
LTSNRLENIHHSMLKGLGGLRTLMLRSNRISCVSNSSFVGLSSVRLLSLYDNQITSMNPG
AFDTLHSLSTLNLLANPFNCNCHLAWLGDWLRRKRIVTGNPRCQNPYFLKEIPIQDVAVQ
DFACEDGNDENSCSPVMRCPAECSCLDTVVRCSNKGLTTLPKGLPKETTELYLDGNHFTQ
VPVELSNYKHLTLIDLSNNQISTLSNHSLSNMSELLTLILSYNRLRCIPVRAFDGLKSLR
LLSLHGNDISLIPEGAFKDLSSLSHLALGANPLYCDCHMQWLSDWVKSGYKEPGIARCAG
PGDMTDKLLLTTPSKKFTCTGPVDLSIQAKCEPCLSNPCKNDGTCTNDPVHYYRCTCPYG
YKGSNCEDPIHACISNPCQNGGTCHLKEGEGSNFWCVCPEGFEGDSCEINIDDCEDNDCE
NNSTCVDGINNYTCMCSPEYTGELCEEKLDFCAPELNPCQHDSKCILTPQGYKCECTPGF
VGEHCELDFDDCKDNKCQNGAQCIDAVNGYTCVCPDGYSGLFCEFAPPMVLPRTSPCDNH
ECLNGAQCVVVGTDPRCQCLHGYEGERCETLVSVNFVNRESYLQLPSNLLSPQTNISLQI
ATDEDSGVLLYKGDNDHIAMELYRGRLRVSYDTGSYPPSAIYSVETVNDGSFHAVELVAA
EQTLSLSIDGGPPKSISSLSKQSTLNIDSPLYLGGMPERASASGGLSALQHSSGGRNGTS
FHGCLRNLYINGKLQDLGAGLDLAALSSGSSQGPQRWLGNGVEPGCQPCQRDTCINGDCH
PTGQRGFTCTCHPGWTGTLCDQQVSNPCDGNKCIYGTCVPINSYSYSCRCQPGFTGVLCD
ERDHDTVNSCSLSHCKHGKCRVSGLGKAYCECNSGYTGEACDREVACRGERIRDVYQRQQ
GYAACQTQEKVSRLECRGSCPGGSEGQGSCCTPLRSKRRKYTFHCTDGSSFVQEVEKVVK
CGCTKCSS
NT seq
4707 nt
NT seq
+upstream
nt +downstream
nt
atggtgggagctctgcgccccgctgcttctagccgctccctggcgactgtctcggggctc
ctggtgattacgattttgctgtccagcggagcggacgctcagccctgcccgacccagtgc
tcttgcaccggaaccacagtggattgtcacggccaaggactccgcagcgtccccaggaac
ataccccgaaacgccgagaggctggatctgaatgcaaataacctcactaaaatcaccaag
gcggatttcgcaggactcaggcatctgcgagtgttgcagttaatggagaacaaaatcacc
acaattgaaagaggagccttccaggacctgaaggagctggagagattgcgcctgaatcgg
aataatctcgctgtgtttcctgagctgcttttcctgggaacaacaaagcttcacagactc
gacctcagcgagaaccagatacagggagttccacggaaagccttcaggggagccgtggaa
atcaagaacctccagctggactacaaccacatcagctgtattgaggatggagctttccga
gcgttacgtgacctggaagtgctcaccctcaataacaacaacatcagccgtctgtctgtg
gccagctttaatcacatgccaaaactcaggactttccgcctgcactccaacaacctgcag
tgtgactgccatgtcgcctggctctccgagtggctgcgacagcgcccccgcctgggtctc
tacacgcagtgcatgtctcctccgcacttgagggggcacaatgtggctgaggtgcagaag
aaggagtttgtgtgcacagatgcctttgaaggtcaccagtcgtcatcatcttcctcctgc
agtgtgttacagtgcccagagtcctgcacctgcagcaacaacattgtggactgcagagga
aagggcctgacagaaatacccaccaaccttcccgaaaccattactgagatacgactggag
cagaacgccatcaaggtgatcccagctggagccttttctccttataagaggctgcgcagg
atagacttgagcaataatcagatatcggagctggcctcagatgctttccagggcctgcgg
tccctcaactctttggttctatacgggaacaagatcacagagatttccaagggtctgttt
gagggactgttttcactgcagctgctcctattgaatgccaataaaatagcatgtctgcga
gtggacgcattccaggatcttcataacctcaatctactctcactgtatgacaacaagctc
caaaccatcgccaaggggaccttcgcatctttaagagccatacaaaccctccacttagcc
caaaacccctttatctgtgactgtcacctgaagtggctggctgactacctgcaggacaac
cccatcgagacgagcggcgctcgatgcaccagcccgcgccggctcgccaacaaacggatc
ggacagatcaagagcaagaagttccgctgctcagctagagaacagtatttcatcccaggt
acggaggattaccgcagtaaactcggaggagactgcttcgccgacttggcctgccccgag
aaatgtcgctgcgagggcacgacggtcgactgctccaaccagaaactcaccaaaatacca
gatcacattcctcagtacacggctgaactgcgtctaaacaacaatgaattcactgttctc
gaggctacagggatctttaaaaagttgcctcatctgcggaaaattaacctgagcaacaac
cgcatcactgacatagaggagggcacttttgaaggagcttcaggggtcaatgagctgatc
ttgacctccaacaggctggagaacatacaccacagcatgttgaaaggactcggcggcctc
cgcacactcatgctgaggagcaacagaatcagctgtgtgagcaacagcagcttcgtgggc
ctgagttcagttcgtctcctttcgctctacgacaaccagatcacctccatgaaccccgga
gcgttcgacacgctgcactctctgtccacgctaaacctcctggctaatccattcaactgc
aactgtcacctggcttggctcggtgactggctgaggaggaagcgcatcgtcaccggaaat
cctcgctgtcagaatccgtatttcctcaaggagattcccattcaggacgtagctgtccag
gacttcgcctgtgaagatggcaatgatgagaacagctgctctcctgtcatgaggtgtccg
gctgagtgctcctgtctggacacggtggtgcgctgcagcaacaaaggcctcaccacacta
cccaaaggtctgcctaaggagaccactgaactgtatttggatgggaaccacttcactcag
gttcctgtggagctctccaattacaaacacctcactctcattgatttgagtaacaaccag
atcagcacgttgtccaaccacagcctcagtaacatgtccgagctgcttactctaatcctg
agctacaaccgtctgcgctgcataccagtgagagcgtttgatggactcaagtctcttcgt
ttgctatctctccatggcaacgacatttccctgatacctgaaggagccttcaaggatctg
tcatcgctttctcacttggctctgggggctaaccctctgtactgcgactgccacatgcag
tggttgtccgactgggtgaaaagcgggtacaaggagccgggcattgcccgctgtgctggg
cctggtgacatgacagacaagctgctcctcaccacaccctccaagaaattcacctgcaca
ggccctgtcgatctgagcatccaggcgaagtgtgagccctgcctgtccaacccctgtaag
aatgacggcacatgcaccaatgaccccgtgcactactatcgctgcacgtgtccttatgga
tataagggttcaaactgtgaggatcccattcatgcctgcatcagtaacccgtgccagaat
ggagggacttgtcatctgaaagaaggagaaggaagcaacttttggtgtgtgtgtccggag
ggctttgaaggagattcgtgtgagatcaacattgacgactgcgaggacaacgattgcgag
aacaactctacctgtgtggatggaatcaacaactacacctgcatgtgttctcctgaatac
acaggagagctctgtgaggagaagcttgacttctgtgccccagagctgaacccatgtcag
catgactcaaagtgcattttgactcctcagggatacaagtgtgaatgcactccaggcttt
gtaggtgagcattgtgagctggactttgacgactgtaaagacaataagtgtcagaatggg
gcgcagtgcattgatgctgtgaatgggtacacctgcgtctgtccagacggatacagtggg
ttattctgtgagtttgctcccccgatggtcctcccccgcaccagcccgtgtgataaccac
gagtgtctgaacggggctcagtgcgttgtggtgggaacggacccacgctgccagtgtctc
cacggctatgagggtgaacgctgcgaaacactcgttagcgtcaactttgtcaaccgagag
tcctacctgcaacttccatccaacctgctctcaccgcagaccaacataagcctccagatt
gcaacagatgaggacagcggtgtgctattgtacaaaggagacaacgaccacattgccatg
gagctgtacagggggcgcctcagagtcagctatgacacaggctcttacccaccctctgct
atatacagtgtggagacagtgaatgatggaagctttcatgccgttgagttagtcgccgcg
gagcagactctgtctctgtccatcgacggcggacccccgaagtccatcagctccctcagc
aagcagtccactctcaacatagattctcccctttatctgggcggaatgccggagcgagct
tctgcctctggaggtctctcagccttgcagcacagctctggaggccgcaatggcaccagt
tttcatggctgcctgcgcaacctttacatcaacgggaagctccaggatttgggggccggt
ttggacctcgcagctctaagttctggaagttcacagggtccccaacggtggctgggcaac
ggtgtggagccgggctgccagccctgccagagagacacctgcattaacggggactgccac
ccaacaggtcagcgggggttcacctgcacctgtcatccaggatggacagggactctgtgt
gaccagcaagttagcaacccttgtgatgggaacaagtgtatttatggtacttgtgtgcca
atcaactcctactcctactcctgccgctgccagcctggtttcactggtgtcctctgtgat
gagagggaccatgacacagtcaattcctgcagtctgtctcactgcaaacatggcaaatgt
agagtgtcgggcctggggaaggcgtactgcgagtgcaacagtggttatacaggagaagca
tgcgacagagaggtggcctgcagaggggaacggatccgagatgtctaccagaggcagcaa
ggctatgcggcgtgccaaacccaggagaaggtctcccgtttagagtgtcgaggcagctgt
ccgggggggtcggaaggacagggctcctgctgcacccccctccgtagcaaacgtaggaaa
tacaccttccattgcacagatggctcttcctttgtccaggaggtggagaaagtggtgaag
tgcggctgtacaaagtgttcttcataa
DBGET
integrated database retrieval system
