Oryzias melastigma (Indian medaka): 112157418
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Entry
112157418 CDS
T07439
Symbol
fip1l1b
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1 isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112157418 (fip1l1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oml03019
]
112157418 (fip1l1b)
Messenger RNA biogenesis [BR:
oml03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
112157418 (fip1l1b)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
112157418
NCBI-ProteinID:
XP_024145892
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All DBs
Position
LG1:22044630..22056695
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AA seq
539 aa
AA seq
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MSAEEADKTTTTDASAGDEEEEWLYGDESETKEEDEEAAKINTDVSASEDAPAEEAAPEH
ATGNGVASETPGEAAGEDVVSDSDSDDDDDDVRVTIGDIKTGAPQYTTYGAPPVNLNIKS
GSRPYGQVSAKLKGVDLDAPGNINGVPVLEVDMESFEEKPWRKPGADLSDYFNYGFNEDS
WKAYCEKQKRLRMGLDVSTVGSVTSKITVQQGRTGNEKDISSLPVHTSKTDFPSPISLYK
SAISQVTRKSCGTIDVIGGGTATISRVEGRRRHNLEGNNIQVISEHSTSDAEPAPAKIPT
FFPPGPIPPNIPPPPFLPPPPNVSTAPPLIPPPRLPITVPPPGFPPPTGGPPPSIIPTMD
GGHPGGYDGRSVPPYPFPQGAYPPPMGGGVPQPWPVMMDNTKSWDYYPRREDKREKERDR
PRERAHEREREREHSPSAVGYTSDEERYRYREYQERVYAERHRDRASREKEDRHRERRHR
EKDEGRHKSSRSSSSRRRHDSEEGDSHRRHKHKKSKRSKEGKEASEEIGADQENQEAME
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcggaggaggcggacaaaacgaccaccaccgatgctagcgccggggacgaagag
gaggaatggctgtatggagatgagtccgagaccaaagaggaggatgaagaagcagcaaaa
ataaacacagatgtcagtgcgtctgaagatgctcctgcagaagaagctgctcctgaacat
gcgacaggaaatggagttgcctcagagaccccgggtgaagctgctggtgaggatgtagtc
agtgacagcgacagtgatgacgatgacgacgatgtccgtgttaccatcggtgacattaag
actggagcaccccaatacacgacttacggcgctccacctgttaatctcaacatcaagtcc
ggctccagaccttatggtcaggtgtctgccaagctgaaaggggtggatttggatgcgcca
ggaaacatcaatggcgtcccagtactggaggtggacatggagtcctttgaagaaaagccc
tggaggaagccaggagcggatctgtctgactatttcaactacggcttcaacgaggacagc
tggaaggcatactgtgagaaacagaagaggctgcgaatgggtttggacgtctcaacggtc
ggatccgtgacgagcaagatcaccgttcagcagggccggaccggcaacgagaaggacatc
tccagcttacccgttcacacgtccaagacagacttcccatctccaatcagcctgtacaag
tctgccatcagtcaggtcaccaggaaatcgtgcggcaccatagatgtgatcggtgggggg
actgccaccatcagcagggttgaaggacggcgcagacacaatctagaaggaaacaatatc
caggtgatctctgaacactcgacatcagacgctgagcctgctcctgccaagattcccacc
ttcttccctcctggaccaattcctccaaacatacctccacctccttttctgcctcctccc
ccaaacgtcagcactgcacctccactcatacccccacccagattgcccattactgtccct
cctcctgggtttcctcctccgaccggtggccctcctccttctatcatccccactatggac
ggaggccatcctggaggttatgacggccgctctgttcctccatatccattccctcagggt
gcttatcctccacctatgggtggcggtgtacctcagccgtggcctgtgatgatggacaac
accaagtcctgggactattatccccgtcgggaggacaagcgggagaaggaaagagaccga
ccccgagagagggcacacgagcgggagcgagagcgggagcacagcccttcagctgtgggc
tacaccagcgacgaggagcgctatcgctaccgcgaataccaggagcgcgtttacgcagag
cgccaccgtgaccgggcgagccgagagaaggaggacagacaccgagagaggcggcacaga
gagaaggacgagggccgccacaaatcttcccgcagcagcagcagccgtaggaggcatgac
agcgaagagggcgacagccaccggaggcacaagcacaaaaagagcaagaggagcaaggag
gggaaggaggccagcgaggaaatcggcgccgaccaggagaaccaggaggccatggagtag
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