Oryzias melastigma (Indian medaka): 112157421
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Entry
112157421 CDS
T07439
Symbol
rims1b
Name
(RefSeq) regulating synaptic membrane exocytosis protein 1
KO
K15291
regulating synaptic membrane exocytosis protein 1
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
112157421 (rims1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oml04131
]
112157421 (rims1b)
Membrane trafficking [BR:
oml04131
]
Exocytosis
Calcium ion-dependent exocytosis
Acrosomal exocytosis proteins
112157421 (rims1b)
Small GTPases and associated proteins
Rab associated proteins
112157421 (rims1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
C2
RIM2a_ZnF
FYVE_2
PDZ
Motif
Other DBs
NCBI-GeneID:
112157421
NCBI-ProteinID:
XP_024145898
Ensembl:
ENSOMEG00000019970
LinkDB
All DBs
Position
LG1:24906862..24993931
Genome browser
AA seq
1585 aa
AA seq
DB search
MSASVGPQGGPRPLAVPLSMPDLPDLSHLTEEERSIIMAVMARQKEEEEKEQAMLKTLHQ
QFESYKQEVRRIGAETRRQQTQQKDDAPTCGICRKTKFADGCGHLCSYCQTKFCARCGGR
VSLRSNNEDKVCLIVKDRVMWVCNLCRKQQEILTKSGGWFSGSGARSGSLDTSSNDPTTG
GEANRDRKLLRSRSQAPSSNTGPGDGTQPPSRVTVIRRGDTMSGSRSQSEPPKEKKRPVS
LHEQNGRGGLGRGSGRRPAGKLQSQSSLDERIVSGERGETRLGDERRLEKIHSQDYEDGD
ESQQRRPENKEQRERQRREEEFQNRYRSDPNLARYPVKPQKEEQEMRMHAKVSKVRHERR
HSDLAINEVGLGPGEGGGVTGGQVPENRLARRAGRREGERKALLDNHQAYPTDRTVGVGV
GGSPAGVGVRSGPQPGGPATNNNRREPGTTRTPKDKEGADLVRKDSQSSDQSESLRPPPS
RSYKSKRGINKRQMSISSSEEEGGSTPEYTSCEDVDMESVSEKGDWDCHPLDPTAWHHPV
SWQPSKEGDHLIGRITLSKRSAMPREAGSLLGLKVVGGKITQSGRLGAFITKVKKGSLAD
VVGHLHAGDEVLQWNGKSLPGATKKEVYNIILESKAEPQVEIVVSRPIGDIPRIPGSPHP
PLESTGSSSFESQKMDRPSISVMSPTSPGTLRDLPLVLPGQLSVKLWYDKVGHQLIVNVL
QAKDLPPRPDGRPRNPYVKMYFLPDRSDKSKRRTKTVKKSAEPKWNQTFIYSHVHRRDFR
ERMLEITVWDQPRIQEEESEFLGEILIELETALLDDTSHWYKLQTHDVSSIPLPQPSPYL
PRRHVHGDSPSKKLQRSHRISDTEFDDGLLVGTEGAERHSRDRERSSTLAVPEQQRAVQH
RSRSVSPHREDSCRARSRPAHVPMQRSLDEIHQNRQHSPSCYHEPQLEHQRSGDSDYEYS
EDSEVQDTHRSIRGGSAECLHTNRSVGRYSSTLPPKMPLLVNGIHKDIYSSTLPACLKSK
PPHRQQEGDTLPRSALAHRVLRFTDEVTVSDLQPSLDRVRSASTTCLRPDTGFHSSERDR
QCSSSSGLNCAGGSGRGLEGDRVHPHGGQSPPPSAGRRGRQLPQLPAKSSSIEQALAVEE
RARQLQMKVHSCRPAASHDPNMDLKAKREMYAEQRRSSDNMSARSSDSDMSDVSVLSHAS
SASRLSSASYMSIQSERPGGRLRSKSLEEDKKDRRISWGMSGEEERRRAAGKRRFSAELK
RRRHTVAGDTGESSRQMRSSMGRSMMKSSSVSGEIYTQERNDGSQSDTALGTVSSGGKKR
RSSLSARVVAIVGNRRTRSTSQISGPEGKSKKEKGAPIQRSTEIGIAVELTRNMSRQPSR
ESNNGSMNSCNSEANLIFSGINVGASSQFSDFLDGLGPAQLVGRQTLATPAIGDIQIGMM
EKKGQLEVEVIRARGLVQKPGSKSLPAPYVKVYLLNNGAYVAKKKTKIARKTLDPLYQQA
LLFDESPQGKVLQVIVWGDYGRMDHKSFMGVAQILLEELDLSSTVIGWYKLFPPASLVDP
TLASLTRRASQSSLDSSSGPTGVRS
NT seq
4758 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcctcggtggggccccagggcggccctcgcccactcgccgtgccgctgtccatg
ccggacctgccggacctgagccacctgaccgaggaggagaggagcatcatcatggcggtg
atggctcggcagaaggaggaggaggagaaggagcaagccatgttaaagacactgcaccag
cagtttgagagctacaaacaagaggtgcgacgaatcggcgctgagacgaggcgccagcag
acccagcaaaaagacgacgcacccacatgtggcatctgtcgtaagacgaagtttgcagac
ggctgcggacacctctgctcctactgccagaccaaattctgcgctcgctgcggagggcgg
gtctccctccgatccaacaatgaggacaaagtgtgtctgatagtgaaggacagggtaatg
tgggtatgcaacctgtgccgtaagcagcaggagattctcaccaaatcaggaggatggttt
tcggggtcgggggcgcggtccgggagcctggacacctcctcgaacgacccgaccacggga
ggtgaggccaatcgggacaggaagctgctccgctccaggtcccaagctccgtcttccaac
accgggccaggggacgggacgcagcctccctccagagtcaccgttatcaggaggggggac
accatgtctggctctcgctcccaaagtgagccacccaaagaaaagaaaagaccagtgtcc
ctccatgaacaaaacggaaggggaggattgggccgtggaagtggccgtcgacctgccgga
aagctgcagtcgcagtcatccctggacgagcgcatcgtttctggagaaagaggagaaacc
aggctgggagatgaacggcggctggagaagattcactcccaagactacgaggacggagac
gagagccagcagaggcgcccggagaacaaggaacagagggagaggcagcggcgcgaggag
gagttccagaatcgctaccgaagtgaccccaacttagccagatacccggtgaaaccgcag
aaagaggagcaggagatgcgcatgcatgccaaggtatctaaggtgcggcacgaacgccgg
cacagcgaccttgcgatcaatgaggtcgggctcgggccgggtgaaggcgggggcgttact
ggaggtcaggtgcctgaaaaccgccttgccaggagggctggaaggcgggaaggagagcgc
aaagccctcctggataaccaccaggcttaccctacggataggaccgtgggggtgggagtt
gggggatcgcctgcaggagtcggagtacgatctggaccccaaccggggggaccagcaaca
aacaacaaccgcagagagcctggtacaacacggacgccaaaggacaaagaaggggcagac
ctagtcaggaaggactcccaaagctcggatcagtcagaatctttgcggccgcccccttcg
cggtcctacaagagcaagcgcggaatcaacaagagacagatgtccatcagcagctcagag
gaggagggcggctccacgcccgagtacaccagctgtgaggacgtggacatggaaagcgtc
agcgagaaaggtgactgggactgtcatcctttagatcccacagcgtggcatcacccagtt
tcgtggcagccgtccaaagagggcgaccacctgatcggacgcatcacactaagcaagagg
tcggccatgccacgagaggctggctctctcctgggtctgaaagtggtgggggggaagata
acacagtcgggaagacttggggccttcatcaccaaagttaaaaaaggcagcctggcagat
gtagtgggacatctgcatgcaggtgacgaggtgttgcagtggaacgggaaatcgctgcca
ggagccaccaagaaagaagtgtacaacatcattctggagtccaaggccgagcctcaggtg
gagattgtggtttcaagaccgattggagacatcccaagaatccccggatccccccaccct
cctctagaatccacaggttccagttcctttgagtcacagaagatggaccgtccctctata
tcagtgatgtcccccaccagcccgggtacgcttcgagacctccccctggtgctgcctgga
cagctctctgtgaagctgtggtacgacaaggtaggccaccagctgatcgtcaacgttctt
caagccaaagatctgccccctcgacctgacggccgacctcggaacccatacgtcaaaatg
tactttctacccgataggagcgataagagcaaacgaaggaccaaaacagtgaagaaaagt
gctgaacccaaatggaaccagaccttcatctattcccacgtccaccgacgagacttccga
gagcgcatgctggagatcacggtctgggatcagcctcggatccaggaggaggagagtgaa
ttcctgggagagatcctgattgagctggagacggccttgttagacgacacctcgcactgg
tacaaactccagacgcacgacgtgtcctccattcccctgccccagccctctccgtacctc
cctcgccgtcacgtccacggagacagccccagcaagaagctccagaggtctcatcgcatc
agcgatacagagtttgatgatggtttgctagttgggactgaaggtgcagagcggcactcc
cgggatcgagagcggagcagcacgttggctgtgccagagcagcagcgggccgtccagcac
cgctcccgctcggtgtctcctcacagagaagactcctgcagggcccggtctcggcccgcc
cacgtacccatgcagaggagtttggatgagatccatcagaaccggcagcactccccttcc
tgctaccacgagccgcagctggagcaccaacgctccggagactccgactacgaatactcc
gaggacagcgaggtccaggacacgcacaggtctatcaggggcgggagtgctgagtgcctg
cacactaacaggagtgtaggtagatacagcagcacactcccccccaaaatgcccctgtta
gtaaacggtatccataaagacatttacagctccaccctccctgcatgtctaaagagcaag
cccccccacaggcagcaggagggcgacaccttgccccgtagcgccctcgcgcaccgcgtg
ctcaggttcacagacgaggtcactgttagcgacctgcagccgtcgttggacagagtgagg
agcgccagcaccacctgtctgaggccggacacgggctttcactcctccgagagagacagg
cagtgcagcagctcatccggcctgaactgcgcaggcggcagcgggagaggcctggagggg
gacagagtgcatcctcatggcggtcaatcccccccgccttcggccggccgcagggggagg
cagctgccgcagctcccggcgaagagcagcagcatcgaacaagctctggcggtggaggag
cgcgcccggcagctgcagatgaaggtgcattcctgtcggcctgcagcctcccacgacccc
aacatggacctcaaggccaagcgggagatgtacgcggagcagaggcgcagcagcgacaac
atgtctgcccgctcgtccgacagcgacatgagcgacgtgtcggttctctcccacgccagc
agtgcctcccgcctcagcagcgccagctacatgtccatccagtccgagcggcccgggggc
cggctcagatccaagtctttagaggaggacaagaaggacaggaggatctcatgggggatg
agcggggaggaggagaggaggagggcggcagggaagaggcgcttctcagccgagttgaag
cgcaggaggcacactgtggcaggagacaccggggagtccagccggcagatgcgatcgtcc
atgggccggagcatgatgaagagctccagcgtaagcggcgagatctacacgcaggagcgc
aacgatggtagccaatcagatacggcgctgggcacggtgagcagcggaggcaaaaagagg
cgctccagcctcagtgcaagggtagtcgccatcgtcggcaaccgtcgaacacgcagcacc
tcacagatcagtgggcctgaagggaagagtaagaaggagaagggcgctcccattcagagg
agcaccgagatcggcatagcggtggagctgacccggaacatgagccgccagcccagcaga
gagtccaacaacggcagcatgaacagctgcaactccgaggcaaatttgatcttctccggc
attaacgtgggggccagcagccagttcagcgacttcctggatggactgggaccagctcag
ctggtgggcagacaaacgctggcaacacccgccatcggtgacatccagataggaatgatg
gagaagaagggccagctggaggtggaggtcatcagagcacgaggcctggtccaaaaacca
ggatccaaatctctcccagctccctacgtgaaggtctatcttctgaataacggagcgtat
gttgccaagaagaaaaccaagattgcacggaaaactctggaccctctgtatcagcaggcg
ctgctgtttgacgagagtcctcaggggaaagtcctgcaggtgatagtctggggagactac
ggccgcatggaccacaaaagcttcatgggagttgcacaaatcctcttggaggagctggac
ctctcgagcacagtcattggctggtacaagctgttcccaccggcctcgttggtggatccg
acgctcgcctctctgacccgcagagcttctcagtcgtccctcgacagctcgtccggaccc
accggagtccgatcttag
DBGET
integrated database retrieval system
