Oryzias melastigma (Indian medaka): 112157428
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Entry
112157428 CDS
T07439
Symbol
toporsa
Name
(RefSeq) topoisomerase I binding, arginine/serine-rich a
KO
K10631
E3 ubiquitin-protein ligase Topors [EC:
2.3.2.27
]
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
oml04121
]
112157428 (toporsa)
03036 Chromosome and associated proteins [BR:
oml03036
]
112157428 (toporsa)
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
oml03037
]
112157428 (toporsa)
Enzymes [BR:
oml01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
112157428 (toporsa)
Ubiquitin system [BR:
oml04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
112157428 (toporsa)
UBL E3 ligases
112157428 (toporsa)
Chromosome and associated proteins [BR:
oml03036
]
Eukaryotic type
Centrosome formation proteins
Centriole proteins
112157428 (toporsa)
Cilium and associated proteins [BR:
oml03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
112157428 (toporsa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-C3HC4_3
zf-RING_UBOX
zf-C3HC4_4
zf-rbx1
zf-ANAPC11
RING_XB3-XBAT31
zf-RING_5
Rad50_zn_hook
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
112157428
NCBI-ProteinID:
XP_024145911
Ensembl:
ENSOMEG00000006739
UniProt:
A0A3B3D7W0
LinkDB
All DBs
Position
LG1:complement(17511114..17515273)
Genome browser
AA seq
761 aa
AA seq
DB search
MSAVKVALQHAQKSGRRKNSEAMSVEVSPDSKCPICLDVFHNISYLDRCLHKFCFRCILE
WSKNKAECPLCKQPFTSIYHSIKSEQDFQKYELKQQVENTSFGYFEGVRFRYRTTLTGVH
RQMRGRTSPPPDNGVMFEASANPPLQRQDRYIRRMMARLAARRRAESEGRTVNNVREQEM
INFRRELYRQGVKVRSVRDGGRSRDTSAEFYRRNPACLHRLVPWLKRELTVLYGAHGSLV
NIVQHIIMSRITRYDMEDGAIQEELRPFLQARTEHFLHEFISFAKSPFNMEAYDQHAVYD
CPAPSSNEDSNSNSSVIAISEEDENLVEIEQPGGSASSLSQSVWDDETPGPSYSTTADPG
RISHLSVHDSDSESSSEGDVQEFRPPQPQVSPSIQIDMTQENCNDEDCPSSDSDDCVIIG
FVKPTKERTPEVVQLSSDSDESSGEDVKAAPLQPKHIRFPSRSPAASPMSECSGSRGARN
PRNDQHPNGNEESGSSKSSKSKKSHRKETDRRRYKSKDKEHRRQRGRSKSGEYRQSSRSP
DISHSHSINGSYSYASKDFPKHDRRHKVRGSDSYSYNHHRHETDCPRKHASYHSSQKHTR
SRSRSPSRETRRRDRRRTRSRTSSSSCSPSSRRNTHHEKPSGKRKYKTRHLEEPDGQRHH
SQDEEGGSVSATHQKKSKERRRKKSKERQRRNSSSVESKEHQQRKHHKKRKHKKKSSRQR
SDEHKKTCLPSVVAIVSKDESFANNRQMCSTDEDKDLDCID
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcagttaaggttgccctccaacacgctcaaaaaagcgggaggagaaaaaactct
gaagcgatgtctgtggaagtctctccggactccaagtgtcccatctgtttggacgttttt
cacaatatttcttacctggatcgttgcctccacaagttctgctttcgctgcattcttgag
tggtccaagaacaaagctgagtgtcccctctgtaaacagccgttcacctcaatctatcac
agtatcaaatccgagcaagactttcaaaagtatgaactgaagcagcaagtggagaacacc
tcgtttggttattttgagggagtgcggttccggtatcgcaccactcttaccggtgtccat
cggcagatgcgaggaagaacctctccgcctccggataatggggtgatgtttgaagcttct
gcgaatcctcctcttcagcggcaggatcgctacattcggcggatgatggcgcggttggca
gccaggaggagagcagagagtgaaggcaggacagtcaacaacgtcagagagcaagagatg
ataaatttccggagagagctgtaccgacagggcgtcaaggttcgcagcgttcgagacggc
ggccgctctcgggatacctccgccgagttctaccgcagaaaccccgcctgcctgcatagg
ttggtgccctggttaaaaagagaactcaccgtgctgtacggagctcacggctctttggtc
aacatagttcagcacatcatcatgtcgcgcattacacgctacgatatggaagacggagcg
attcaggaagagctgaggccgttcctccaggctcgaactgagcattttctgcacgagttc
atcagtttcgccaagtcccccttcaacatggaggcgtatgaccagcacgccgtttatgac
tgtccggccccctcctccaacgaagacagcaactccaactcgtccgttattgccatctca
gaagaggatgagaacctcgtcgagatagaacaacctggaggatctgcctcttctctgagc
cagtctgtgtgggacgatgagactcccggtccgtcgtattcaacaacagcagatccaggc
aggatatcccacctgtcggtccatgactcggactctgaaagcagttcagagggggacgtt
caagagttcaggcctccccaaccgcaagtgagtccaagtatccaaatagacatgactcag
gagaactgtaacgacgaagattgtccatcgtccgacagtgatgactgtgtgatcatagga
tttgttaagccaacaaaagaaaggactccagaggtggtacagctgtcctctgattctgat
gagtcttccggggaagatgtcaaagctgcgcctctccaaccgaagcacattcgtttcccc
agccgtagtccagcagcttcaccgatgagcgaatgcagcggctccagaggagcaagaaac
ccaagaaacgatcaacatcccaatggaaatgaggagtctggctcatcaaaatcaagcaaa
tctaaaaagtctcacagaaaagagacagaccgaagacgttacaagtcaaaagacaaagag
cacagaagacagagaggaaggtcaaaaagtggagagtacagacaatcaagcagaagtcca
gacatctcacacagtcactccatcaatggaagttattcttacgctagcaaagactttccc
aaacatgacaggaggcataaagttagaggtagtgactcctactcgtataaccatcacaga
cacgagacagattgcccacgtaagcatgccagctatcacagcagccagaagcacactcga
tctcgctccaggagccccagcagggagaccaggagacgagacaggaggaggactcgatcc
agaacttcctccagcagctgctccccttcgtcgagaagaaatacgcaccacgagaagccc
agcgggaagaggaaatacaaaacgaggcacttggaggaaccagacggacagaggcaccac
agccaggacgaagaagggggctcggtgtcggccacacaccagaaaaagtctaaggaaagg
cgtcgtaaaaaatccaaagaaaggcagagaaggaacagcagcagtgtggagtcaaaagaa
caccagcaaaggaaacaccataaaaagaggaaacacaagaaaaaaagcagtcggcaaagg
agtgatgagcacaaaaaaacctgcttgccctctgttgtcgccattgttagtaaagatgag
tcttttgctaataacaggcagatgtgtagcacagatgaggataaagatcttgattgtatc
gactag
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integrated database retrieval system
