Oryzias melastigma (Indian medaka): 112157449
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Entry
112157449 CDS
T07439
Name
(RefSeq) transcription factor Sox-10
KO
K09270
transcription factor SOX7/8/10/18 (SOX group E/F)
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oml03000
]
112157449
Transcription factors [BR:
oml03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
112157449
SSDB
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Motif
Pfam:
Sox_N
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
112157449
NCBI-ProteinID:
XP_024145944
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All DBs
Position
LG1:22563637..22567121
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AA seq
498 aa
AA seq
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MSGEEHSLSEAELSPGGSDDGHSLSPPQPGAAAGHDSPLSGPPQQLTALCVADGGADDAS
RGRAKSEDEDDRFPIGIREAVSQVLDGYDWTLVPMPVRVSNGNKAKPHVKRPMNAFMVWA
QAARRKLADQYPHLHNAELSKTLGKLWRLLNENDKRPFIEEAERLRKQHKKDYPEYKYQP
RRRKNGKLMPSSESDSQGEGEASHSQSHYKTLHLDHNVGAGSPLGDLHHHHHHHHHPGGH
SPPTPPTTPKTELQSGKLSDAKREGGAGAAGGSGGSRGALGVGADGASGGPSSSSKPHID
FGTMDIGEISHEVMSNIEPFDVNEFDQYLPPNGHPQSGAGAASVGSSASSYAYALAAASG
HSAWISKQQQQQPQASPSSSDPSKAQIKSESASASHYSDASSSPSSGTHVTYTPLSLPHY
GSAFPSLASRAQFDYGEHQAPGAYYAHSSQAPGLYSAFSYMGPTQRPLYTTIGDPSSVAP
SHSPTHWEQPVYTTLTRP
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atgtccggtgaggagcacagcctgtccgaggcggagctgagccccggcgggtcagatgac
ggtcactcgctctcaccgcctcagcccggagcggccgccggtcatgactcccccctgagc
gggcctccgcagcagctgaccgcgctgtgcgtggcggacggcggcgcagacgacgcgagc
agagggcgcgccaagtcggaggatgaggacgacaggttcccgatcgggatcagggaggcg
gtcagtcaggtgctggacggctacgactggacgctcgtgcccatgccggtgcgcgtgagc
aacggaaacaaagccaagccacacgtgaagaggcccatgaacgcgttcatggtgtgggcg
caagccgccaggagaaagctggccgaccagtacccccacctgcataacgcggagctcagc
aagactctggggaaactctggaggctgctgaacgagaacgacaagaggccattcatcgag
gaggcggagaggctgaggaagcagcacaagaaggactatcccgagtacaagtaccagcct
cggaggcgcaaaaacggcaagctgatgccctccagcgagtccgacagccagggtgagggt
gaggccagccactcccagtcccactacaagaccctgcacctggatcacaatgtgggtgca
gggtctcccctgggtgacctgcaccaccaccaccaccatcaccaccaccctggaggtcac
agccctcctacgccccccacgaccccaaagacagagctccagtctgggaagttatcagat
gctaaaagggaggggggagcaggggcggccggaggatcaggggggtccaggggtgccctc
ggggtgggagcggacggggcctctggtggcccctcatcgtcctccaagccccacatcgac
tttggcaccatggacatcggagaaatcagccacgaggtgatgtccaacatcgagccgttt
gacgtcaacgagttcgaccaatacctccctccaaacggccatcctcagagcggagctggg
gccgcctctgtcggctcctccgcctcctcgtatgcctacgccctggcagcggcgagcggc
cactcagcctggatctccaaacagcagcagcagcagccccaggcctcgccgtcttcctcc
gatccctccaaggctcagatcaaaagcgagtcggcgtcggccagccattactccgacgcc
tcgtcctcgccctcgtcaggcacccacgtcacctacacccctctcagcctgcctcactac
ggctctgccttcccctcgctggcctccagagctcagtttgactacggagagcaccaggcc
cctggggcatactacgcccactccagccaagctccggggctgtattcagctttctcctac
atgggcccgacacagaggcctctgtacaccaccataggagacccctccagcgtggccccc
tcccacagccccacacactgggagcagcctgtttacaccaccctcacaagaccttga
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