Oryzias melastigma (Indian medaka): 112157509
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Entry
112157509 CDS
T07439
Name
(RefSeq) CCR4-NOT transcription complex subunit 2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112157509
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oml03019
]
112157509
Messenger RNA biogenesis [BR:
oml03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112157509
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
112157509
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
112157509
NCBI-ProteinID:
XP_024146046
Ensembl:
ENSOMEG00000022902
LinkDB
All DBs
Position
LG23:21968149..21978977
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AA seq
532 aa
AA seq
DB search
MFGANRKKFMEGGIESDYTDESSLYYSPQSMFPPHRADKDMLSSSSASSSGQLSQLGASL
YGPQSALGFPMRGMNSSSTPQLSRSGLNQSAGQLSSTPSSGSLHTPPSPSRGILPMSSRS
VLNHNQQVGGPTGQTSGMGGERGGGGGRSGSMGSPSRSSPSIIGMPKQQQARQPFTINSM
SGFGVNRNPGFNMNNSLSNNIFNGTDGSENVTGLDLSDFPALADRNRRDGGSNPTPLLNP
LAGRAPYVGMVTKPSSEQSQDFSIHNEDFPALPGPNYQTKDPTSSSEDNKTQNLNSSGKS
TSSSDGPKFPGDKSSTPSNNNQQKKGIQVLPDGRVTNIPVGMVTDQFGMIGLLTFIRAAE
TDPGMVHLALGSDLTTLGLNLNSPENLYPKFSSPWASAPCRPQDIDFHVPSEYLTNIHIR
DKLAAIKLSRYGEDLLFYLYYMNGGDLLQLLAAVELFNRDWRYHKEERVWITRAPGMEPT
LKTNAYERGTYYFFDCLNWRKVAKEFHLEYDKLEERPHVPSTFNYNPAQQAF
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atgtttggtgctaaccggaagaagtttatggagggagggatagagagcgactacacggac
gagtcgagcctctactacagcccgcagtccatgttccctccccacagagccgacaaagac
atgttgtcgtcttcctctgcctcctcatcgggtcagctgtctcagctgggagccagtctg
tacgggcctcagagcgctctgggctttcccatgcggggcatgaacagcagctccacacct
cagctcagccggagcggcctgaaccagtcagccggtcagctctccagcactcccagctct
ggctctttgcacacaccgccgtcgccgagcagaggcatcctgcccatgagcagccgcagc
gtcctgaaccacaaccagcaggtgggggggccgacggggcaaaccagcgggatgggagga
gagagggggggcggcggagggaggagcggcagcatgggcagccccagccgctcgtctccc
agcatcatcgggatgcccaaacagcagcaggcgcggcagccgttcaccatcaacagtatg
tcaggatttggcgtgaacaggaacccgggcttcaacatgaacaactccttatccaacaac
atctttaacggcacagacggcagcgagaatgtgacgggcttggacctgtcggacttcccc
gcgctggccgaccgaaaccggagggacggaggttcaaatcccaccccattgctcaacccg
ctggccggtcgggcgccttacgtcggcatggtaaccaagccatccagtgagcagtcgcag
gacttctccatccacaacgaagacttccccgctctccccgggccgaactaccaaactaaa
gaccccaccagcagcagtgaagacaacaaaacgcagaacttgaactcatcaggaaaatcc
acctccagctcagatggtccaaagtttccgggtgataagagttccactccgagcaacaac
aaccagcagaagaaagggattcaggttcttcctgacgggcgagtgaccaacatccccgtc
ggcatggtaacagaccagtttggaatgatcggtttgctgacgttcatccgggcagcagag
acggatccagggatggttcatctggcgctgggctccgacttaaccacgctgggcctgaac
ctcaactcaccagagaatctctatcctaagttttcgtctccgtgggcgtcggctccctgt
cgaccgcaggatatcgacttccacgttccctcagagtatttaaccaacatccacatacgg
gataagctagcagccattaagttgtctcggtatggagaagatctgctgttttacctttac
tacatgaacggaggagacctgctacaactgctggcagcagtagaactgttcaaccgggac
tggcggtaccacaaagaggagcgggtctggatcacccgcgctcccggcatggagcccacg
ctgaagaccaacgcctacgagcgaggaacctactacttctttgattgtctcaactggagg
aaggtggccaaggagttccacctggagtacgacaaactagaagagcggcctcacgttccc
tccaccttcaactacaatcctgcccagcaggccttctga
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