Oryzias melastigma (Indian medaka): 112157603
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Entry
112157603 CDS
T07439
Symbol
brf1b
Name
(RefSeq) BRF1 RNA polymerase III transcription initiation factor subunit b
KO
K15196
transcription factor IIIB 90 kDa subunit
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oml03021
]
112157603 (brf1b)
Transcription machinery [BR:
oml03021
]
Eukaryotic type
RNA polymerase III system
Basal transcription factors
TFIIIB
112157603 (brf1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
BRF1
Zn_Ribbon_TF
Cyclin_N
Zn_ribbon_tTFIIB
RB_B
Motif
Other DBs
NCBI-GeneID:
112157603
NCBI-ProteinID:
XP_024146199
Ensembl:
ENSOMEG00000022742
UniProt:
A0A3B3CSM5
LinkDB
All DBs
Position
LG24:complement(19178331..19201664)
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AA seq
685 aa
AA seq
DB search
MSSRVCKTCGGGDIDVDQARGSAVCTSCGSVLEDNIIVSEVQFVEGSGGVSSAVGQFVSS
DGPVKAPLLGSGFHTSVGKESRAQTLQNGKRQIHKLGSQLQLNQHCLDTAFNFFKLAVSK
HLTRGRKTEHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYILGKTFLLLARELCINAPA
IDPCLYIPRFAHLLEFGLKTHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMH
KFRRSVKDVISVVKVCHTTLRKRLTEFEDTPTSQLTIDEFMRVDLEQECDPPSFTAGQHK
AKMQQLEQELTKKLDEVEGEISCYKDEIENELEKSRPKLRGIYAAYSKEIAPENEDALSS
TSEEAEGEDTELQAATEHLAQDFLSQVIQEVNERQGETQGSCTPEVESEDTHLSTVREAL
LNTASLCLLETFHTSEKSEMEKNADSYMETSGELDLEGIDDQEIEKYILDEKEVEVKTGL
WMKQNAEYLQEQKEKEERINKEKEQGTYKEKKKKKYRKREQIEALTAGEAIEKMLEKKKI
SSKINYDVLRDLNTGAGSPSASSPEPPKSSSAPKRLNRRRRRKTSEASQDMAVNASIMGK
RFRHLISTTPPKKKKKTPAQVEQTVTIATQSTEPLDSIPDVPSAAPPPAEEEEEEEEEEE
AEKECVSALQLVGDYGCEAEEEDGF
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atgagctcccgggtgtgcaagacatgtggagggggcgacatagatgtggaccaggctcgg
ggcagcgcagtgtgcaccagctgtggttctgttctggaggacaacatcatcgtctcagaa
gtccagtttgtggagggcagtgggggcgtgtcttctgcagtgggacagtttgtgtcttct
gatggtccggtcaaagctcccttgcttggttctggcttccacaccagcgtcgggaaggag
tcgcgtgctcagaccctgcagaatggtaagcggcagatccacaagctcggcagccagctt
cagctcaaccagcactgcctggacacggccttcaactttttcaagctggcggtcagcaag
catctgacacgaggacgcaagacggagcacgtcattgcagcatgcctctacctggtgtgt
cgcacggaggggacgcctcacatgctgctggacctaagcgacctgctgcaggtgaatgtt
tacatcctgggaaagacgtttctgctgctggctcgagagctctgtatcaacgcgcccgcc
atcgacccttgcctgtacatccctcgcttcgctcacctgctggagtttgggttgaagact
cacgaggtttccatgacagctcttcgtctccttcagaggatgaaaagagactggatgcac
acaggccggcgtccttctggactctgtggagcagcgctcctggtggcagctcgaatgcac
aagttccggcgttcagtgaaggatgtgatcagtgtggtgaaggtctgccacaccaccttg
aggaagagactgacagagtttgaggacacacccacaagtcagctgacaattgatgagttc
atgcgggtggatctggagcaggagtgtgaccccccctccttcactgctggacagcacaaa
gcaaagatgcaacagcttgagcaggagctgaccaagaagctggatgaggtagaaggagaa
atcagctgctacaaagatgagattgagaacgagctggagaaaagccgtcccaaacttaga
ggaatctatgctgcctattccaaagaaatcgctcctgagaacgaagatgcgctctcgtcg
acctccgaggaggcagaaggggaagacactgagctccaggcagccactgagcacctggct
caggacttcctgtcccaggtaatccaggaggtgaatgagaggcaaggcgagacacaaggt
tcctgcaccccggaggtcgaatcagaggacacccacctctccaccgtccgagaagcactg
ctgaacactgccagcctgtgcctcctggaaacctttcacacctcggagaagtcagagatg
gagaaaaatgcagacagctacatggagacaagcggagagctggacctggaaggcattgat
gatcaggagattgaaaagtacatcctggacgagaaggaggtggaagtgaagacggggttg
tggatgaaacagaacgctgagtacctgcaggagcagaaagagaaagaggaaaggatcaac
aaggagaaggagcagggtacctacaaagagaagaagaagaagaaatacaggaagcgggag
cagattgaggcactgactgcaggggaagctattgagaaaatgctggagaagaaaaaaatc
tccagcaagatcaactacgatgttcttagagacttgaacactggggctgggagtcccagc
gcttcgtcccccgagccgcccaaatcctcttctgctccgaaacgacttaatcgccgccgc
cgcaggaagaccagtgaagccagccaagacatggctgttaacgcctccatcatggggaaa
aggtttcgacacctaatatccacaacaccaccgaagaagaagaagaagacacctgcccag
gttgaacaaacggtcaccatagcaacacagtcaaccgagccactagatagcattccagac
gtcccatcagctgctccacctccagcagaggaggaggaagaagaggaggaagaggaggag
gcagagaaagagtgtgtcagtgccctgcagcttgtaggagattacggctgtgaggcagag
gaggaagatgggttttag
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