Oryzias melastigma (Indian medaka): 112157669 Help Entry 112157669         CDS       T07439                                  Symbol rtcb Name (RefSeq) RNA-splicing ligase RtcB homolog   KO K14415   tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8] Organism oml  Oryzias melastigma (Indian medaka) Brite KEGG Orthology (KO) [BR:oml00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03016 Transfer RNA biogenesis [BR:oml03016]     112157669 (rtcb) Enzymes [BR:oml01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase      112157669 (rtcb) Transfer RNA biogenesis [BR:oml03016]  Eukaryotic type   tRNA spricing factors    tRNA splicing ligase complex     112157669 (rtcb)  Prokaryotic type    tRNA splicing ligases     112157669 (rtcb) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  RtcB Motif Other DBs NCBI-GeneID:  112157669 NCBI-ProteinID:  XP_024146311 Ensembl:  ENSOMEG00000021278 LinkDB All DBs Position LG23:complement(22729520..22733020) Genome browser AA seq 505 aa AA seqDB search MSRSYNDELQYLEKLSGTCWRIKKGFVPNMQVEGIFYVNEPLEKLMFEELRNACRGGGVG GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMGDPSAVVSPGGVGFDI NCGVRLLRTNLDERDVQPVKEQLAQSLFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSL REGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYND YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDSITVNDRQLACAHVTS QEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFSKVFGTTPDDLDMHVIYDVSHNIAKVEE HIVDGKQRTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD VVNTCHDAGISRKAIKLRPIAVIKG NT seq 1518 nt NT seq  +upstreamnt  +downstreamnt atgagcagaagctacaacgatgagctgcagtacctggagaagctgtccgggacctgctgg aggatcaagaagggcttcgtgcccaacatgcaggttgaagggatcttctacgtgaacgag cctctggagaagctgatgttcgaggagcttcggaacgcctgccgtggaggaggtgtgggc ggcttccttcccgccatgaagcagatcgggaacgtggcggcgctgcccggcatcgtgcac agatccatcggtctgccggacgtccactcggggtacggattcgccatcggaaacatggct gccttcgacatgggtgaccccagcgccgtggtgtctccaggcggcgtgggattcgacatc aactgcggcgtccgtctcctgaggaccaacttggacgagcgggacgtccagcccgtgaag gagcagctggcccagtcgctgttcgaccacatcccggtgggggtggggtccaaaggagtc atccccatgggagccaaagacctggaggaggcgctggagatgggcgtggactggtccctg agggagggctacgcctgggccgaggacaaggagcactgcgaggagtacggccgcatgctg caggccgaccccaacaaggtgtcgtccaaggccaagaagagaggcctgccgcagctggga actctgggagcaggaaaccactacgcagagatccaggtggtggacgagatctacaacgac tacgccgccaagaagatgggcatcgaccacaagggccaggtgtgcgtgatgatccacagc ggcagcaggggcctcgggcaccaggtggccacagacgcgctggtggccatggagaaggcg atgaagcgcgacagcatcacggtgaacgaccggcagctggcctgcgcccacgtcacctcg caggaggggcaggactacctgaagggcatggcggcggcggggaattatgcctgggtcaac cgctcctccatgaccttcctcaccagacaggccttctccaaagtgttcggcactacgccg gacgacctggacatgcacgtcatctacgacgtgtcccacaacatcgccaaggtggaggag cacatcgtggacgggaagcagaggacgctgctggtccaccgtaaaggctccacccgtgcc ttcccgccgcaccaccccctgatccccgtggactaccagctcacgggccagccggttctg atcggaggcacgatgggaacctgcagctacgtcctgacgggcaccgagcagggcatgacg gagaccttcggcaccacctgccacggagcgggccgcgctctgtcccgggccaagtcccgc cggaacctggactttcaggacgtcttggacaagctggctgacatgggcatcgccatccgg gtggcgtcgcccaagctggtcatggaggaggcgccggagtcgtacaaaaacgtgacagac gtggtcaacacgtgtcacgacgccggcatcagcaggaaggccatcaagctacgacccatc gccgtcatcaagggctga

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