Oryzias melastigma (Indian medaka): 112157754
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Entry
112157754 CDS
T07439
Symbol
hif1aa
Name
(RefSeq) hypoxia inducible factor 1 subunit alpha a
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml04137
Mitophagy - animal
oml04140
Autophagy - animal
oml04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
112157754 (hif1aa)
04137 Mitophagy - animal
112157754 (hif1aa)
04148 Efferocytosis
112157754 (hif1aa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oml03000
]
112157754 (hif1aa)
Transcription factors [BR:
oml03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
112157754 (hif1aa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
HIF-1a_CTAD
PAS_11
HIF-1
PAS
PAS_9
PAS_4
HLH
PAS_2
Motif
Other DBs
NCBI-GeneID:
112157754
NCBI-ProteinID:
XP_024146540
Ensembl:
ENSOMEG00000006896
UniProt:
A0A3B3BJZ0
LinkDB
All DBs
Position
LG22:complement(12948282..12963032)
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AA seq
748 aa
AA seq
DB search
MDTGFVPEKKRVSSERRKEKSRDAARCRRGKESEVFYELATLLPLPHSVSSSLDKASVMR
LTISYLRMRKLLGSDEPKQEEETELDMKFNSSYLKALDGFLMVLSEDGDIIYLSENVNKC
LGLAQFDLTGQNVFDYTHPCDQEELREMLVYRTGSKKAKEPNSERSFFLRMKCTLTSRGR
TVNVKSATWKVLHCSGHVHVNGVQAEQNSNGQKEPPVPYLVLICDPIPHPSNIEVPLDTK
TFLSRHTMDMKFTYCDERITELMGYDPEDLLNRSIYEYYHALDSDHLTKTHHNLFAKGQV
CTGRYRMLAKSGGFVWVETQATVIYNNKNSQPQCVVCVNFVLSGIQEEKLIMSLDQIEDV
KSVKEEPQEADEAAAESDETASPKPENGPEQELIKHFKKMAQSEPFDTLYDQLKEEPEAL
TLLAPAAGDTIISLDFSQPEPEPEIHLLKDAPLYNDVMLLSTSDKLALPLSPLPPSEALS
LSNTPEEVKPESPTAAPPSTLIPDSPPQTDSSIDFCFPMDSEENSEFKLDLVEKMFAIDT
ESKTPFNTQDLDLEMLAPYISMDDDFQLPCVTVEEPQPSGPVKLLKPSPVCVTKDALSYP
TPQLNPLSGCTASPGPPDTAGTPSLPAETPKRAGNLEKDVHPCSPAAPNTQRKRKLSDLM
EIIEQGPLPKELEKGKKLKPSELGTTRTVLLVPSDLASRLLGTTSESSSSPFTLPQLTRY
DCEVNAPLQGRQYLLQGEELLRALDHVI
NT seq
2247 nt
NT seq
+upstream
nt +downstream
nt
atggacacaggattcgtacccgaaaagaaaagagtgagttcagagcggaggaaggagaaa
tccagggatgcagcgagatgccggcgtgggaaggagtcggaggtgttttacgagctggcc
acgctgctgccgctccctcacagcgtcagctccagcctggacaaagcttcagtcatgaga
ctcaccataagttacctgcgtatgagaaaactactgggctccgatgagcctaaacaagaa
gaggaaaccgagctggatatgaagttcaacagttcctaccttaaggctctggacggtttt
ctcatggtgctgtctgaagacggagatataatctatctctcagagaatgtcaacaagtgc
cttggactggcgcagtttgatctgaccgggcaaaatgtgtttgactacacacatccctgt
gaccaggaggagctgagggaaatgttggtgtacagaacaggctccaagaaagcaaaagaa
ccaaattcagagcgcagcttcttcctccgaatgaagtgcacgctcactagcagaggccgc
accgtcaacgtcaagtcagctacatggaaggtgcttcactgctcgggtcacgtgcacgtt
aacggcgtccaagctgagcagaacagtaacggacaaaaggagcctcctgtgccgtacctg
gttctgatctgtgatccaatcccccacccctccaacatcgaagtccctctggacaccaag
accttcctcagccgccacaccatggacatgaagttcacatactgtgatgagaggatcact
gagctcatgggttatgacccagaagacctgctaaatcgttctatttatgagtactaccac
gctctggactcggaccatctcactaaaactcaccacaacttgtttgctaaaggccaggtc
tgcacgggtagataccggatgttggcgaagagcggaggctttgtgtgggtcgaaacacaa
gccacagttatctacaacaacaagaactctcagccgcagtgtgttgtttgtgtcaacttt
gtgctcagtggaatccaggaagagaagctgattatgtctctggatcagattgaggatgtg
aaatcggtgaaagaggagccgcaggaggcagacgaagctgcagctgagagcgatgagacg
gcctcaccaaagccagaaaacggaccagagcaagaactgataaagcactttaaaaagatg
gcgcagtcagaaccgtttgacacactgtatgaccagctgaaggaggagcccgaggccctc
accctgctcgctccagcagctggagacacaatcatctctctggattttagccagcctgaa
ccagaaccagagatccacttgctgaaggacgctcctctctacaatgatgtaatgctgctt
tccacaagtgacaagctggctctgcctctgtcccctctgccgcccagcgaggctctcagt
ctgtccaacacacctgaggaggttaaacctgagagtcccaccgcagcccctcccagcacg
ctgatccctgacagtccgccgcagaccgacagttcgatagacttttgcttccccatggat
tcagaagagaactctgaattcaaactggacctggtggagaagatgtttgccatcgacacc
gaatccaaaacccccttcaacacacaggacttggatctggagatgttggctccctacatc
tccatggacgatgatttccagctgccttgtgtcaccgtagaggagccacagccctctgga
ccagtcaaactcctgaaaccctccccggtttgtgttacaaaagacgccctcagctatccc
accccccagctaaacccgctcagcggttgcacggcctctccaggaccgcctgacactgcc
ggcaccccgtctctgcccgccgagacaccgaagagagctggaaacctggagaaagatgtc
cacccctgcagtcctgctgctccaaacacgcagcgtaaaagaaaactgagtgatctaatg
gagatcattgaacagggacctttgcccaaggagttggagaagggcaaaaaactaaaacca
tcggagctgggaacaactaggactgtccttttggtaccttcagatttggcgagtcgactt
cttggcaccacttcagagagctccagttctcccttcactctgccgcagctcactcgctac
gactgcgaggtaaacgcccctttacaaggtcgccagtacctcctgcagggggaggagcta
ctgcgggcattggaccatgtcatctga
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