Oryzias melastigma (Indian medaka): 112157819
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Entry
112157819 CDS
T07439
Symbol
samm50l
Name
(RefSeq) sorting and assembly machinery component 50 homolog B
KO
K07277
outer membrane protein insertion porin family
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml04137
Mitophagy - animal
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
112157819 (samm50l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03029 Mitochondrial biogenesis [BR:
oml03029
]
112157819 (samm50l)
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
oml02000
]
112157819 (samm50l)
Mitochondrial biogenesis [BR:
oml03029
]
Mitochondrial protein import machinery
Outer membrane
TOB/SAM complex
112157819 (samm50l)
Transporters [BR:
oml02000
]
Other transporters
Pores ion channels [TC:
1
]
112157819 (samm50l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Omp85
POTRA
Motif
Other DBs
NCBI-GeneID:
112157819
NCBI-ProteinID:
XP_024146603
Ensembl:
ENSOMEG00000016298
LinkDB
All DBs
Position
LG23:complement(5611238..5624278)
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AA seq
470 aa
AA seq
DB search
MGTVHAKSMDPLPMHGKDLGVNPDDLMEPPEQEADAKQEILENKDVVVQHVNIQGLGRTK
EDLLGYEISDVFNAKNLIDVMKKAHIARQRLLRLGIFKEVEVLIDTSEGVDALPNGLDVT
FEVNEIKRLTGSYNTMVGNNEGSMVLGLKLPNMFGRAEKLTFQFSYGTKETSYGLSFFKP
QPGYFERNLTLNMYKVTGQFPWSSLKETDRGVSAELSFPVGPTSHMLKWEGVWRELGCLA
RSASFAVREESGHSLKCGLSHTMSIDSRNSAIFPSSGALLRINQELAGFTGGDASFFKED
FELQLNRRLFWDSVLSGSLWGGMLFPIEGKPSCIADRFYLGGPTSVRGFGMYSIGPQSEG
DYLGGEAYWAGGLHLYTPLPFRPGRGGFGDLFRTHFFLNAGNLCNLNYGEGPRAHLQKLA
ECIRWSYGAGIVLRLGNIARLELNYCIPMGVQSGDRICDGVQFGAGIRFL
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atggggaccgtccacgcgaagagtatggacccactaccgatgcacggcaaggatcttggg
gtcaacccggatgacctgatggagcctccagaacaggaagcagatgccaagcaggagatc
ttagaaaacaaggatgtggtcgtccagcatgtcaacatccagggtttggggagaaccaaa
gaagatctgctcggctatgagatctccgacgtctttaatgccaaaaatctcattgacgtc
atgaaaaaagctcatattgcaagacagaggcttctgcgcctgggaatcttcaaagaagtg
gaggtcctcattgacacatctgagggtgtggatgctttgcccaatggtttagatgtgact
tttgaggtgaacgagatcaagcgactgacaggaagttacaacactatggttgggaacaac
gaaggaagcatggttctgggtctgaagcttcccaacatgtttggccgagccgagaagctg
accttccagttctcctatggtacgaaagagacgtcctatggcttgtccttcttcaagccc
cagccaggatactttgaacgcaacctcactctcaacatgtacaaagtcaccggccaattc
ccatggagctccttaaaggagactgaccggggcgtgtcggcggaattaagttttcccgtg
gggccaaccagccacatgctgaagtgggagggcgtgtggagggagctgggctgcctggct
cgcagcgcctcctttgcggtgcgcgaggagagcgggcactcgctgaagtgtggcctctcg
cacaccatgtcaatcgactccagaaattctgccattttcccgagcagtggtgccttactt
cgcatcaaccaggagctggctggcttcaccggcggagatgccagcttcttcaaagaggat
ttcgagttgcagctgaacaggcggcttttctgggattctgtcttgtctggctctctgtgg
ggcgggatgctgtttcccattgaaggaaagccttcttgtatcgctgacaggttctacctt
ggaggccccacgagcgtgcgaggctttgggatgtacagcataggccctcaaagtgaaggt
gactatttgggtggggaagcatactgggctggcggcctgcacctctacactcctcttccc
ttcaggcccgggagagggggcttcggagatcttttcagaacacacttctttctgaacgca
ggaaacctatgcaacctgaactatggtgagggtccgcgagcacaccttcagaagctagca
gagtgcattcgctggtcctacggagcgggcatcgtgctgcgcctgggaaacatcgccaga
ctggaactcaactactgcatccctatgggcgttcagagtggagaccggatatgtgacggt
gtccagtttggagcgggaattcgctttctgtga
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