Oryzias melastigma (Indian medaka): 112157934
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Entry
112157934 CDS
T07439
Symbol
taf1b
Name
(RefSeq) TATA box-binding protein-associated factor RNA polymerase I subunit B
KO
K15213
TATA box-binding protein-associated factor RNA polymerase I subunit B
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oml03021
]
112157934 (taf1b)
Transcription machinery [BR:
oml03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
112157934 (taf1b)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rrn7_cyclin_C
Zn_ribbon_RRN7
Rrn7_cyclin_N
DUF5816
WBS_methylT
Motif
Other DBs
NCBI-GeneID:
112157934
NCBI-ProteinID:
XP_024146815
Ensembl:
ENSOMEG00000004251
LinkDB
All DBs
Position
LG24:complement(24404619..24415342)
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AA seq
571 aa
AA seq
DB search
MFTDRGRMDEEETAGYAQPCAQCAAVDWGLTEEGRFFCRSCHNVIERTKEVVDLSFIQGA
NRISTLSRDSRKKTTGGGHMWMVCEGFQVILMNQADALIRLGVHPHFKDGVLRQLWRLYL
QKSRQAYCVNRIRSAKFRLGATDSDSDSGAETSAASGTDGESYPPSSPSSKGGSDWSGSV
DSLCYLTPRQRRSRSLLSLKKTLALIHLALVWSREALTLSDLLWLVNCGCVPYVNAHEQL
PEQMKLYGKDALLFNVETVPSHRSLHKEAQDLLRFLQLPAFPPISQQTLMHPAPLSLRYL
IDANLPGELHRWVCRVTELAGLFQESSQTIHPERQPSLLRYDLQAAALIIVTMKLLFGLD
DHSEWELSNNAGCTDGEGAQFNLRSWYKLMQAAQIRARHRREQDTARRQWTAKTPVVSRK
KDKSWIMKKKRVAEQLQLCFEKLSSQPEGLKEAPPSSFRFCWGEQKGADGPSLHHTGLDG
VVGLKNGILTPHNQSYWHSSLRPCNPGRCQNHLSDLEKTLPSSFVWLLGLFSFLLDVKPS
YLYEEVLSVERRVFADRRQDGNQDQNFGSDL
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atgtttactgaccgtggaagaatggacgaagaagaaacggcgggttacgcgcagccgtgc
gctcagtgcgcagccgtggactggggcctcacggaggagggtcgcttcttctgcaggtcc
tgccacaatgtcatcgagagaaccaaggaggtggtcgacctctccttcatccagggagcc
aatcggatctccaccctcagcagagactccagaaaaaagacaacaggtgggggtcacatg
tggatggtctgtgaaggtttccaggttatcctgatgaaccaggcggatgcactgataaga
ctaggagtccatcctcacttcaaggacggcgtgctccgtcagctgtggagactctacctg
cagaagagccggcaggcttactgcgtcaaccggattcggagcgccaagttcagattggga
gccacagactcggattcagacagtggagctgagacgtctgcagccagcgggacggatgga
gagtcatacccccccagcagccccagctctaaaggaggcagtgactggtccgggtccgtg
gacagcctctgttacctgacgcctcggcagaggcggagccgcagcctcctgagcctgaag
aagaccttggctctgatccacttggctctggtctggagccgagaggcgctgactctcagc
gacctgctctggctggtgaactgcggatgtgtcccgtatgtgaacgctcatgaacaactc
ccagagcagatgaagctgtacggcaaagatgctcttctgtttaatgtagagacagtcccc
tctcaccgctcgctgcataaggaggctcaggatctgcttcggttcctgcagcttccagca
tttcctcccatcagccagcagactctgatgcacccggcgccactgagcctgcgttatctg
atcgatgcaaacctgcccggtgagctgcacaggtgggtctgcagagtgacggagctggca
ggtttgttccaggaaagcagccagacgatccaccctgagcgtcagcccagcctgctgcgg
tacgacctgcaggcggcggcgctcatcatcgtcaccatgaagctcctctttggcctggac
gaccactccgaatgggagttatccaacaacgccggctgcacagacggcgagggggctcag
tttaatctgcggagctggtacaaactgatgcaggccgctcagatccgagctcggcacagg
agggagcaggatacagccaggagacagtggacagccaaaacacccgttgtctccagaaag
aaggacaaaagttggatcatgaagaagaaaagagtggcagagcagctgcagctgtgcttt
gagaagctgtcctctcagcccgagggccttaaagaagcccccccctccagcttcaggttc
tgctggggcgagcagaagggagctgacggccccagtcttcaccacaccgggctggatgga
gtggtgggtcttaaaaatggcattctcaccccccacaaccagtcctactggcattcgtcg
ctcagaccctgcaatcccgggagatgccaaaaccacctgtcggatttggaaaagacgctg
ccgagctcctttgtttggctgctgggactgttctccttcctgctggacgtgaagcccagc
tacctgtacgaagaggtcctgagtgtggagagacgggtgtttgcggaccgcagacaggac
ggaaaccaggaccagaactttggctcagacctctga
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