Oryzias melastigma (Indian medaka): 112158058
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Entry
112158058 CDS
T07439
Symbol
capn3b
Name
(RefSeq) calpain-3b
KO
K08573
calpain-3 [EC:
3.4.22.54
]
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
112158058 (capn3b)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
oml01002
]
112158058 (capn3b)
Enzymes [BR:
oml01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.22 Cysteine endopeptidases
3.4.22.54 calpain-3
112158058 (capn3b)
Peptidases and inhibitors [BR:
oml01002
]
Cysteine peptidases
Family C2: calpain family
112158058 (capn3b)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C2
Calpain_III
Calpain_u2
EF-hand_1
EF-hand_6
EF-hand_8
EF-hand_7
EF-hand_5
CAPN13-like_C_EFh
Motif
Other DBs
NCBI-GeneID:
112158058
NCBI-ProteinID:
XP_036066336
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All DBs
Position
LG24:6204976..6219556
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AA seq
780 aa
AA seq
DB search
MSSDSIANQVTLKAEVMGDKKNEEKAPLVAEETKVKVLHETEATLDVDGVTDYGLTGANS
IYSAILSRNEEVKDAKRLKTFLELRDKYVKKKVLFEDPLFPANDSSLFYSHKPSMKIEWK
RPSEICENPQFIIDGANRTDICQGELGDCWLLAAIACLTLSEKLLYRVIPPEQSFTENYA
GIFHFQFWRYGEWIDIVVDDRIPTCNNLLVFTKSFRENEFWSALLEKAYAKLHGSYEALK
GGNTLDAMEDFTGGVTELFELSEAPKGLFIIMKKALERGSLMGCSIDDTSGNEIESRTEQ
GLVRGHAYSIIALEECDQVSGDAKIRLIRLRNPWGWVLWKGPWSVNSKEWSIISTADREN
LKKQTLEMSEFWMSFDDFKKNFTKLEMCNLTPDALEGEERQSWTVSINEGRWVRGSSAGG
CRNFPDTFWTNPQYRLRLYEEDDPDEREVLCTVVVALMQKGRRMQRHTGAKFLTIGFSIY
EVPKELQGQNQHLQKDFFLYNASKAKCKTYINLREVTERFRLPPGEYVILPTTFKAHEEG
EFLLRVFSENKSTSEEAETTIDKIQKGKPIVFVSDRARANKEIEHEGIRGEKKKKPKRKL
LQPVEETEEEKQFRAIYQKIAGEDMEICAGELMTIMKNVLSKHSDIKSEGFSLETCRSMI
ALMDTDGSGKLNLQEFKHLWKKIKMWQLIFKSYDKEGKCCISSFEMRNAVNDAGYHLNKQ
LYDIIAMRYADKQLNIDFDSYICCFVRLEGMFRAFNAFDKDGDGIIKLNVLEWLQLTMYS
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
atgagcagtgacagtatagctaaccaagtgaccctaaaggccgaggtgatgggggacaag
aaaaacgaagagaaagctcctctagtagctgaggaaacaaaggtgaaggtgcttcatgaa
actgaggccaccctggatgtcgatggcgtgactgattacggcctcactggagcaaactcc
atctactcggcgattctcagcagaaacgaggaggtcaaagatgccaagcgactgaagact
tttttggaactgcgagacaaatatgtgaagaagaaggttttgtttgaggaccctctgttt
cctgcaaacgactcaagtcttttctacagccacaaaccatcgatgaagattgagtggaag
cgtccctcagagatctgtgaaaaccctcagttcatcatagatggagccaacagaaccgat
atctgtcaaggagaactcggtgactgctggctgcttgccgccatcgcctgtctgacgctg
agtgaaaagctgctgtacagagtcatcccaccggagcaaagtttcacagagaactatgct
ggcatcttccacttccagttttggcgttacggtgaatggatcgatatagttgtagacgac
cggatccccacctgcaacaatctcctagttttcaccaaatcgttcagagaaaatgagttc
tggagtgcccttctggagaaagcctacgccaagctgcatgggtcttatgaagcactgaaa
ggggggaacacgttggacgccatggaggacttcacggggggagtcacggagctctttgag
ttgtccgaggcgcccaaaggcctgttcatcatcatgaagaaagctctggagagaggctcg
ctgatgggctgctccattgacgacacatcaggtaatgaaatagagagccggacagaacaa
gggctggtcagaggtcacgcctactccatcatagccctggaagagtgtgaccaggtttca
ggggatgccaaaattcgcctgattcgtctacgtaatccctggggttgggtgctctggaag
ggtccatggagcgtgaattcaaaggagtggtcgatcatctccacagcagacagagagaat
ctgaaaaaacagacgttggagatgagtgagttctggatgtcttttgatgatttcaagaaa
aacttcaccaaattggaaatgtgcaacttaactcctgacgcgctggagggtgaagagaga
caaagctggacggtgtcgatcaacgagggccgctgggtgagaggcagctctgctggcggc
tgcagaaacttcccagacacgttttggaccaaccctcagtaccggctgcggctgtacgaa
gaggacgaccccgatgagagggaggtgctctgcactgttgtggtggctctgatgcagaag
ggtcggaggatgcagcgccacaccggagccaaattcctcaccattggattttcaatttat
gaggtgccaaaagagttgcagggccagaatcagcatctgcagaaggactttttcctctac
aacgcctccaaagcaaagtgtaagacctacatcaacctgcgcgaggtgacggagcgtttc
cgcctccctccgggggagtacgtcatcctaccgacaacctttaaggctcacgaagagggg
gagttcctcctccgggtgttctctgagaataaaagcacatcagaggaggcagagactaca
attgacaaaatccagaaaggaaagccaatcgtgtttgtgtccgacagagcacgcgccaat
aaagaaatcgagcacgagggcattcggggggagaagaaaaagaaaccaaagcgtaaactg
ctacaacctgtggaagagacggaggaggaaaagcagttccgagcaatttaccagaagatt
gctggtgaggacatggagatctgtgctggcgagctgatgacgatcatgaagaacgtactc
tccaagcatagtgacataaagtccgaaggtttcagtctggagacgtgccgcagtatgatc
gctttgatggacactgatgggtctggaaagttgaatctgcaggagttcaaacatttgtgg
aaaaagatcaagatgtggcagctcatctttaaaagctacgataaagaaggaaaatgctgc
atcagcagttttgagatgaggaatgccgtaaacgacgcagggtatcatctgaacaagcag
ttgtatgacatcatcgccatgcgctacgcagacaagcagctcaacatcgactttgacagc
tacatctgctgtttcgtgagactggagggcatgttcagagcgttcaatgcttttgataaa
gatggagatggaataatcaaactcaatgtgcttgagtggcttcagctgaccatgtactct
taa
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