Oryzias melastigma (Indian medaka): 112158247
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Entry
112158247 CDS
T07439
Symbol
si:dkey-119f1.1
Name
(RefSeq) structural maintenance of chromosomes protein 6 isoform X1
KO
K22804
structural maintenance of chromosomes protein 6
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oml03400
]
112158247 (si:dkey-119f1.1)
DNA repair and recombination proteins [BR:
oml03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
SMC5-SMC6 complex
112158247 (si:dkey-119f1.1)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
AAA_23
SMC_N
AAA_15
Laminin_II
AAA_29
AAA_21
SMC_hinge
Motif
Other DBs
NCBI-GeneID:
112158247
NCBI-ProteinID:
XP_024147266
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All DBs
Position
LG24:complement(8246900..8259115)
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AA seq
1091 aa
AA seq
DB search
MSKRRSSTVIENPDKRIRSDVEAEEDNEEEENIADNDQEDVYQLDVHQLGVGDVVSDAGI
LESITLKNFMCHSLLGPFAFGSNVNFVVGNNGSGKSAILTALIVTLGGNAHATNRGSSLK
DFVKEGESSADVSITLRNKGRDAFKLKLYGPLITVEMRITRDGLRTYKLRSHFGSVISTK
KEELISILDNFNIQVNNPVSVLTQEMSKHFLHSKGEGDKYRFFMKATQLEQMRETFVYIK
TTKQATQHKIELQNENLKRLREDYKREEERYKSLASIDEIQNKLEELRKEMAWALVSEME
RNLEPKKEKLEADRRSTQKYDEKVNEWKSKVEEAERKYKQTEEDLERITQQVQELQPKCV
ELKTEAQKRNNALKSCEVTVHRCKANLRDLDKDKVQLSSRIKDLKFSFSQTSGAESQARA
ERVSQIQAELENLSHQNSTLVQQIEQYRNANIRTKEEQGKVRREHETIKRSIEASSRNLR
ILESSRSNRLRRFGEHMPNLLDAIKVAHQRGQFKHKPRGPLGFLINLKDSEMALAVEICL
KNQLHAFTCDNYDDEKVLQELMRKFYPTGRRPAIITSPFFPKVHDTRRRAVIHPEFPSVL
QALEIEDPIVANCLIDQRGIESILLIKNNVLARKVMLGKNPPRNCTQAFSKEGDQIFTNR
VYSADQTRANCLSGDVEEEIRLTQRELENQKAQENRFQQQIRKLDDEIKQNEILLKKCQM
TQKSTKDKMTKLQLELTDLQNVEEPQSEDLKALEEDLQEVVSKVSMKQTQYDEAKDQMAK
LKENYEEAEQEYKQHKESINTLLEEAESVKEDLSKTDQEVVRCKHHTKHYEEKRSGHLKN
IQSLEAELKSKEEELQESVAKAAQICPERLETSRPAKSLDSEINRMKVKIATQQEQQGDR
NEIVRQFAKARDSYKNMSQQIKNLNSFIKSLTSVMNQRLQAYTEFRKFFSARCKYYFNSM
LAQRGYSGSMIFDHKNETLSISVQPGQGNTADLSDMRSLSGGERSFSTVCFVLSLWAITE
APFRCLDEFDVYMDMVNRRISMDMMLKVASGQLFRQFIFLTPQNMSSLPISSNIRILRLK
DPDRGQNNSST
NT seq
3276 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaacggagaagcagcaccgtcattgaaaacccggacaagagaatcaggtcagat
gtggaggctgaagaggacaacgaggaggaggagaacatcgctgataatgatcaagaggat
gtttatcagctggatgttcatcagctgggtgttggagatgtggtgagtgatgcagggatt
ctggagagcatcaccctgaagaacttcatgtgccactccctcctcggtccttttgctttt
ggctccaatgtcaactttgtagttggcaacaatggaagtggaaaaagtgccattctgacg
gctctcattgtcaccttggggggtaatgcgcacgccacaaacagaggatcctcccttaag
gattttgtgaaagaaggagaaagttcggcagacgtatcgatcactctgcgtaacaaagga
agagatgcattcaaactgaaactctatggaccgttgatcactgtggaaatgagaataaca
cgagatgggttgagaacctacaaactaagaagtcattttggtagtgtcatttcaactaaa
aaagaagaactaatttctattctggacaattttaatattcaggttaacaatcctgtttca
gttctcacccaggaaatgagcaaacacttcctgcactccaaaggagagggggacaagtat
aggttttttatgaaagccactcaactggagcaaatgcgagaaaccttcgtttacattaaa
accaccaaacaagccactcagcataaaattgaactacaaaatgaaaatttaaaaagactg
agagaggattacaagagggaggaggagcgttacaagagcttggcttctattgacgaaatc
cagaacaaactggaagaattacggaaagaaatggcctgggcgttggtttctgagatggag
cgcaacctggaaccaaagaaggagaagctggaggcagaccggcggtccacgcagaaatat
gatgagaaggtcaacgagtggaagagtaaggttgaggaagctgagaggaaatacaagcag
acggaggaggacttggaaaggatcacccagcaggtccaggagcttcagcccaaatgtgtt
gaactgaagaccgaagctcagaaacgaaacaacgcactcaagtcctgtgaggtcaccgtt
cacagatgcaaggcaaacctgagagacctggacaaggataaagttcaactttcctcacga
atcaaagatctcaagtttagcttcagtcagacctctggagcagagagtcaggccagagcc
gagcgggtcagtcagatccaggcagagctggagaacctgagccatcagaattccactcta
gtgcagcagattgagcagtatagaaacgctaacatccgcaccaaagaagagcaaggaaag
gtcaggagagagcatgaaaccatcaagaggtctatagaagccagcagcagaaacctgagg
attttagagagcagccgctcaaatcgactccggcggtttggcgagcacatgcccaacctg
ctggacgccatcaaagtagctcaccaaaggggccagttcaagcacaaacccaggggacct
ctcggtttcttgatcaatctgaaagactcggagatggccctcgctgtggagatctgtctg
aagaaccaacttcacgccttcacctgtgacaactacgatgatgaaaaggtcctgcaggaa
ctcatgagaaagttctaccctacaggccgcaggcccgccatcattaccagcccctttttt
ccaaaggttcacgatacaagaaggagggccgtgattcatcctgaattcccctccgtcctt
caagctttggaaattgaagaccccattgtggccaactgcctcatcgatcaacgaggcatc
gagagcattctgctcatcaaaaataatgttctagctcggaaagtgatgctgggcaaaaat
cctcctcggaactgcacacaagccttttccaaggagggagatcagatctttaccaaccgg
gtttactctgcagatcagacccgagcaaactgtctgtccggggacgttgaggaggagatc
aggctgacgcagagagagctggagaaccagaaagcccaagaaaatcgtttccagcagcaa
ataagaaagctggacgacgagatcaaacagaatgaaatattactcaaaaaatgccaaatg
acccaaaagtccacgaaagacaaaatgacaaagctgcagctggaactgacggacctgcag
aacgtagaagaacctcagtcagaggacctcaaggcgctggaggaagatttacaggaggtc
gtctccaaggtttcaatgaagcaaacccaatatgatgaagcaaaagatcagatggccaaa
ctgaaggagaactatgaggaggcggagcaggaatacaagcagcacaaagagtccatcaac
acgcttttggaggaggcggagtcagttaaggaagatctgagtaaaaccgaccaggaagta
gtcagatgtaaacatcacaccaaacactatgaagagaagcgcagcggccaccttaagaac
atccagtctctggaggcagaacttaaaagcaaagaggaggaactgcaggagtctgtggca
aaggctgctcagatttgtcccgagcgtttggaaacctctcgaccggccaagagtttggac
agcgaaataaaccgcatgaaagtgaagattgcgacccagcaggagcaacaaggagatcgc
aacgagattgtcaggcagtttgcgaaggccagagacagctacaagaacatgtcgcagcaa
atcaagaacctcaactctttcattaaaagcctgaccagcgtcatgaaccaaaggctccag
gcgtacaccgagttcaggaaattcttttctgctcgctgtaagtactactttaacagcatg
ctggctcagcgaggatacagcggaagtatgatctttgaccacaagaacgagaccctttcc
atttcggttcaaccaggtcaaggaaacacggctgacctgagcgacatgcgctccctgtct
ggaggcgagcgctccttctccaccgtgtgttttgtcctgtctctttgggccatcacagag
gcgccttttcgctgtctggacgagtttgacgtttacatggacatggtgaacagaaggatt
tctatggacatgatgctaaaggtggcttcaggtcaactcttcagacagttcattttcctc
acgccgcagaacatgagttcccttccgataagcagcaacatccgtatccttcgcctcaaa
gatccagaccgaggacagaataactcgtccacatga
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