Oryzias melastigma (Indian medaka): 112158271
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Entry
112158271 CDS
T07439
Name
(RefSeq) next to BRCA1 gene 1 protein isoform X1
KO
K17987
next to BRCA1 gene 1 protein
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml04137
Mitophagy - animal
oml04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
112158271
04137 Mitophagy - animal
112158271
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oml04131
]
112158271
03029 Mitochondrial biogenesis [BR:
oml03029
]
112158271
Membrane trafficking [BR:
oml04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
112158271
Pexophagy
Other pexophagy associated proteins
112158271
Aggrephagy
Cargo receptors
112158271
Xenophagy
112158271
Other autophagy associated proteins
Midbophagy
112158271
Mitochondrial biogenesis [BR:
oml03029
]
Mitochondrial quality control factors
Mitophagy factors
Other mitophagy factors
112158271
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHD_DNA_bind
RHD_dimer
N_BRCA1_IG
Motif
Other DBs
NCBI-GeneID:
112158271
NCBI-ProteinID:
XP_024147299
LinkDB
All DBs
Position
LG8:23402192..23425385
Genome browser
AA seq
1102 aa
AA seq
DB search
MASALRMSEASFINYDNELQLNLMPYDYIPPVDIKTEPYIPETVHGPYIQIIEEPKQRGF
RFRYECEGPSHGGLPGASSEKNRRTYPTVKINNYMGPARVEVQLVTHTDPPRVHAHSLVG
RHCTESGTCVLDIGPNDLTAAFSNLGILHVTKKGVVDVLTRRLREERRRQTGAHCHLTDA
DEASIQKEVKELSKSMDLNIVRLKFTAYLEDSNGGFTRALKPVVSNPIYDSKSPNASNLK
ISRMDKTCGSVLGGDEIFLLCDKVQKDDIEIRFYEEDDEGGWEAFGDFSPTDVHKQYAIV
FKTPPYHSTEIQRSVTVFLQLRRKKAGDSSDPKQFTYIPQVQDKEEVMRKRQKPLPHYEN
WRGTGGGRGGGAGGFGGGATGGGGGGFQFHQQMNGGGGGGGGGTGVVEGGGERGGRGETL
RGPEAHQVPEVSSFTLPGASASSTPPCSSCRGQTSGGGFQCSVCTSCTLCEPCSFSHDPS
HNLVRARTPLSIPERGSPAPDHSRFYRRGDRSFRKAEKQRLKAEKRLLKAEVKEIRKQLR
MERRGIQWNSSQRDGSSSPVLLQPQATQHNSPERPKCPCPMVVPAMTAAFLDENLPDGTR
LRPATKFIKYWKMRNTGTVSWNSDTKLKFMWGNLAVGSGDRWKEVPVPHLQPGQVGIISV
ALSAPAVEGSYTSHWRLAHAGEQFGPRVWCSIVVDPLAPAPMLADGLLISPCVTPQGRNP
AVKEIKASVASVDQDLMSLDQEEFHIPSVDLLTAQDLLSFELLDINIVQELESVPNNTPV
DVTPCMSPLPQDGHLLDKNSPSLDLIQEETECIGTITGSTCWPQEAKSKRLVLSHSDDAP
AQPAPGAEVGVVPAQEESQENPSGVESVCETVNHSGTHERVSDHNLLRVTYQVTMKDAPQ
EKKGKENKERTRSRSSSTSSEDYIIILPDCFDTTRPLGESMYSSAVSQTVDVLLKSTSGS
EILSLGSTTKERDVSRICKDLSSPPGKDMSGARVLKDMLCTSQTLDEKALTPEVMMKSKT
ALTQSLQSSKEADADDCRVGERIQSSERFPTKDVTSPEQSKTDDAEAAGSTEENNPAGTR
FPGLCVVKGALSLDKIPPPRTL
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atggccagcgctctgaggatgagcgaagcctccttcatcaactacgacaacgagctgcag
ctcaacctgatgccgtatgactacattcccccggtggacataaagactgaaccctacata
cctgagacagttcacggtccgtacatccagatcatcgaagagcccaaacagaggggtttc
cgcttccgctatgagtgtgagggtccgtcccacggcggcctgccgggggcgtccagcgag
aagaaccggaggacctacccgacggtgaagattaacaactacatgggtccggcccgggtg
gaagtgcagctcgtcacccacaccgacccgcccagagtccacgcccacagcctggtgggg
cgccactgcaccgagagcggcacctgcgtgctggacatcggccccaacgacctcaccgcc
gcgttcagtaatttagggatcctccatgtaaccaagaagggcgtggtcgacgttctgacc
cgaagactgagggaggagaggaggagacaaaccggggcacactgtcacctgacagatgct
gacgaggcctccatccagaaggaggtgaaggagctcagtaagagcatggacctgaacatc
gttcgtctgaagttcaccgcctacctggaggacagtaacggaggcttcacgcgcgcgctc
aaacccgtggtgtccaaccccatttatgacagcaagtcgcccaacgcctccaacctgaag
atctcccgcatggataagacgtgtggctctgtcctcggaggagacgagatcttcctgctg
tgtgacaaagtgcagaaagacgacatcgagatccgcttctacgaggaggacgacgagggc
ggctgggaggcgttcggggacttctctcccaccgacgtgcacaagcagtacgccatcgtg
ttcaagacgccgccgtatcacagcaccgagatccagcgctccgtcaccgtcttcctgcag
ctccggaggaagaaggcgggcgacagcagtgaccccaaacagttcacctacataccacaa
gtccaagacaaagaagaggtgatgaggaagaggcagaagccgctgcctcactatgagaac
tggagaggaacaggaggaggaagagggggaggggctgggggatttgggggaggagctaca
ggaggaggaggaggaggatttcagttccaccagcagatgaacggaggagggggaggagga
ggaggaggaacaggagtggtagaaggcgggggagagagggggggtagaggggaaaccctg
agagggccagaggcccatcaggttcctgaggtttcatcctttactctacccggggcttca
gcttcatccactccgccctgctcttcctgcagggggcagaccagtggggggggcttccag
tgcagtgtgtgcacttcctgcacgctgtgtgagccgtgcagcttctctcatgatccgagt
cacaacctggtaagagcgaggactccgctgtcgattccagaacgaggatcgcccgcccca
gaccacagcaggttctacagacgaggtgatcgtagtttccggaaggcagagaaacagcgg
ttaaaggctgagaagcgcttactgaaggcagaagtcaaagagatccggaaacagctgagg
atggaaaggcgtggcatacagtggaactcctcccagagagatgggagctcctcccctgtt
cttctgcagcctcaggccactcaacacaacagcccagagcgcccaaaatgcccctgtccc
atggtggttcctgccatgaccgctgcttttctggatgagaacctcccagatggaactcga
ctgcgtcctgctacgaagtttatcaagtactggaagatgaggaacactggaactgtcagt
tggaacagtgatactaagttgaagtttatgtggggaaaccttgcagtgggatctggtgac
cgatggaaagaagtgcctgttccccatctgcagccaggacaggtgggcattatcagcgtg
gctctgagtgcccctgccgtggaaggctcatatacctcacactggcgcctggctcatgct
ggggagcagtttggacccagagtttggtgcagcattgtggtggaccctctggccccagct
cccatgttagctgatggattactcatctcaccatgtgtcacaccgcaaggtagaaaccct
gcagttaaggagataaaagcctctgtagcatctgtggaccaagacttaatgtcactagac
caggaggagttccacattccctcagtggatcttctgacagcccaggatcttctgtccttt
gagctgttggacatcaacattgttcaagaattggagtctgtcccaaacaacactcctgtt
gatgtgactccctgcatgtcacctcttccccaagacggacacttgctggacaaaaacagt
ccctctttggatctgatccaggaagagacagagtgcatcggcaccatcaccggaagtacc
tgctggccccaagaagccaaaagtaaacggctagtactcagtcattctgatgatgctcct
gcccaaccagctcccggagcagaagtgggcgtggttccagctcaggaagaaagccaggaa
aaccccagtggggttgagtccgtttgtgagactgtgaaccattcagggacccatgagagg
gtctctgaccacaacctgctgagagtgacttaccaggttaccatgaaagatgcaccccag
gagaaaaaagggaaggaaaataaggaaagaacgagaagccgctcgtcttcaacctcctca
gaggattacatcattatccttcctgactgctttgacacaactcgaccacttggggagtcc
atgtacagttcagctgtgtcccagactgttgacgttctcttaaagtccacgtctgggtct
gaaattctttccttgggcagcaccaccaaggagagggatgtgagcagaatctgcaaagac
ttatcatctcctccaggaaaggacatgtccggggcccgagtcctcaaagacatgctgtgc
acgtctcaaacactggatgaaaaggccctgacacctgaagtgatgatgaagtccaaaacc
gcgcttacacaaagtttacagagcagcaaagaagcagatgctgatgactgcagagttgga
gagagaatccagagctcagagcgctttccaacaaaagatgttaccagccctgagcaaagt
aagacggatgatgctgaagctgctgggagcacagaggaaaacaatccagcaggaaccagg
tttccaggcctctgcgtggtaaaaggagctctcagcctcgacaaaatccctccaccaagg
acactttga
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